Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq55454 167 4e-39 >seq55454 Length=9146 Score = 167 bits (184), Expect = 4e-39 Identities = 193/250 (77%), Gaps = 10/250 (4%) Strand=Plus/Minus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTT-GCTCGAATA-CATTAGCATG 131 ||||||||||||||||||||||| |||| |||||| || || ||||| || | ||||| Sbjct 8566 TTTACTTTGAAAAAATTAGAGTGCTCAACGCAGGCGATTCGCCTGAATAACAGT-GCATG 8508 Query 132 GAATAATAGAATAGGACGTGCGGTT-CTATTTTGTTGGTTTCTAGGACCGCCG--TAATG 188 ||||||||||| | || | | ||| || || ||||||||| | ||| | | ||||| Sbjct 8507 GAATAATAGAACAAGA--TCCTGTTTCTGTTCTGTTGGTTTTT-GGAATACAGGATAATG 8451 Query 189 ATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTT 248 ||||| ||||| || |||||| | ||||| | |||||||||||||||||| Sbjct 8450 ATTAAGAGGGACAGACGGGGGCATTCGTATTGCGGCGCTAGAGGTGAAATTCTTGGACCG 8391 Query 249 ATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGA 308 ||||| ||||||||||||||| || ||||| ||||||||||| |||| |||||| Sbjct 8390 TCGCAAGACGAACTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTGATCA-AGAACGA 8332 Query 309 AAGTTAGGGG 318 ||||||| || Sbjct 8331 AAGTTAGAGG 8322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 913328269568