Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq83090 282 6e-74 seq201740 107 3e-21 seq175310 73.4 5e-11 >seq83090 Length=1507 Score = 282 bits (312), Expect = 6e-74 Identities = 217/255 (85%), Gaps = 8/255 (3%) Strand=Plus/Minus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1441 CTTAACCTTCCAGCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACA-TCTTCGCAC 1383 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCA-GCTC 119 ||||||||||||||| |||||||||||||| |||| |||||||||||||||| |||| Sbjct 1382 GGACCTGTGTTTTTAATAAACAGTCGCTTCTCTCTGGCCTCTGCGACCACCACCCCGCTC 1323 Query 120 A------ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTT 173 | | | ||||||||| ||| ||||||||||||||||||||||| ||||| Sbjct 1322 CCACCGCAAAGGGTGTTCACCAGGCATGGTCCCCCTTCTCCCGAAGTTACGGGGGCATTT 1263 Query 174 TGCCGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTG 233 |||||| |||||||||||| ||| | ||| | ||| ||||||||||||| ||||||||| Sbjct 1262 TGCCGAGTTCCTTAACCACGATTCTCTCGATCACCTGAGTATTCTCTACCCGACCACCTG 1203 Query 234 TGTCGGTTTACGGTA 248 |||||||||| |||| Sbjct 1202 TGTCGGTTTAGGGTA 1188 >seq201740 Length=8247 Score = 107 bits (118), Expect = 3e-21 Identities = 173/248 (70%), Gaps = 23/248 (9%) Strand=Plus/Plus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| ||||||| ||| |||||||||||| || ||||||||| |||| || ||| ||| Sbjct 1230 TTAACCTTCCAGCACTGGGCAGGCGTCACCCCCTATACATCGTCTTA-CGACTTAGCAGA 1288 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAA 121 || |||||||||| ||||||||||| || ||| |||||| |||| Sbjct 1289 GAGCTGTGTTTTTGCTAAACAGTCGCCCGGACCTCTTCACTGCGA----------CTCA- 1337 Query 122 CACGTCGTTCACCAGCAGTG-GCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 | | || || || ||||||||| | || |||||||| ||||||| || Sbjct 1338 ----TATT------GCTATGAGCTCCCCTTCTCGCTAACTTACGGGGTTATTTTGCAGAG 1387 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 ||||||| | | |||| | || ||||||| || ||| | ||||||| |||||| || Sbjct 1388 TTCCTTAGCTATAGTTATCTCGCTTGCCTTAGGATATTCTCCTTGACCACGTGTGTCCGT 1447 Query 241 TTACGGTA 248 | ||||| Sbjct 1448 TCTCGGTA 1455 >seq175310 Length=6051 Score = 73.4 bits (80), Expect = 5e-11 Identities = 69/87 (79%), Gaps = 1/87 (1%) Strand=Plus/Minus Query 140 TGGCACCCCTTCTCCCGAAGTTACGG-GGCCATTTTGCCGAATTCCTTAACCACAGTTCA 198 |||| | |||| | |||||||||||| | || |||||||| |||||||| | ||||| Sbjct 5498 TGGCCCTCCTTATTCCGAAGTTACGGTAGTCAATTTGCCGAGTTCCTTAAGGATTGTTCA 5439 Query 199 CCCGAACGCCTTAGTATTCTCTACCTG 225 | | |||||||| |||| |||||| || Sbjct 5438 CTCAAACGCCTTTGTATACTCTACTTG 5412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 693024220868