Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq201740 262 1e-67 seq175310 152 1e-34 seq68454 152 1e-34 seq83090 138 3e-30 seq202179 118 3e-24 >seq201740 Length=8247 Score = 262 bits (290), Expect = 1e-67 Identities = 230/281 (82%), Gaps = 4/281 (1%) Strand=Plus/Plus Query 1 CGCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGC 60 ||||| || |||||||||||||| | | ||||||| |||||| | |||||||| Sbjct 1036 CGCGGGTAACCTGCATCTTCACAGGTACTAAGATTTCACCGAGTCTATAGCCGAGACAGC 1095 Query 61 GCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 120 | | ||||||||||| ||||||| |||| ||||||||| ||||||||||||||||||| Sbjct 1096 GTCCGGATCGTTACGCCTTTCGTGCGGGTCAGAACTTACCTGACAAGGAATTTCGCTACC 1155 Query 121 TTAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTC-GATCAAGAGCTTCGCGTT 179 ||||||||||||| ||||||||||||||| || |||||||| | |||| |||||||| | Sbjct 1156 TTAGGACCGTTATAGTTACGGCCGCCGTTCACTGGGGCTTCAGTTCAA-AGCTTCGCTTA 1214 Query 180 AGCTAACCCCATC-AATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCAC 238 ||||| | ||| |||||||||| |||| ||||||||||||| |||||||| || | Sbjct 1215 CGCTAA-CAAATCTCTTTAACCTTCCAGCACTGGGCAGGCGTCACCCCCTATACATCGTC 1273 Query 239 TTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGC 279 || || || |||||| ||||||||||| ||||||||||| Sbjct 1274 TTACGACTTAGCAGAGAGCTGTGTTTTTGCTAAACAGTCGC 1314 >seq175310 Length=6051 Score = 152 bits (168), Expect = 1e-34 Identities = 197/270 (73%), Gaps = 4/270 (1%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||| ||| || ||||||||||||||||| | | |||||||| ||||||| Sbjct 5845 GCATCTGCACTGCTATTTCAATTTCACTGAGCCAATCCTCGAGACAGCTGTTGCATCGTT 5786 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 | | ||||| |||||| | | | ||| | | ||||||||||||||||||||||||| ||| Sbjct 5785 AAGTCATTCATGCAGGACCGCATTTAACGGCCAAGGAATTTCGCTACCTTAGGACCCTTA 5726 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGC---TTCGCGTTAGCTAACCCC 189 | | || ||||||| || | ||||| || |||| | | || ||| ||| Sbjct 5725 TAGGTAAGGCCGCCATTAATCGGGGTATCCTTCAAAACCTAATTTTTTTTAATTAAGTAA 5666 Query 190 ATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCA-CTTTCGTGTTT 248 || ||| || ||| || ||||||| | |||||| | |||| | | ||| | ||| Sbjct 5665 ATTCGTTACCCAGCCGACATCGGGCAGACATCACACTCAATACTTTGATATTTAATCTTT 5606 Query 249 GCAGAGTGCTGTGTTTTTAATAAACAGTCG 278 |||||||||| |||||||| |||||||||| Sbjct 5605 GCAGAGTGCTTTGTTTTTATTAAACAGTCG 5576 >seq68454 Length=3912 Score = 152 bits (168), Expect = 1e-34 Identities = 200/275 (73%), Gaps = 3/275 (1%) Strand=Plus/Minus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 || |||| |||| |||||| ||| ||||||||||||||| | |||||||| Sbjct 3714 TAAACTGTATCTGCACAGCTATTCCAATTTCACTGAGTCAATCATCGAGACAGCTGTTGT 3655 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||||||| |||||| |||| | | | | ||| | | ||||| ||||||||||||||||| Sbjct 3654 ATCGTTAAACCATTCATGCAAGACCGCATTTAACGGCCAAGGCATTTCGCTACCTTAGGA 3595 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT--TCGCGTTAGCTA 184 || | || | || ||||||| || | ||||| || |||| | || || | | || Sbjct 3594 CCCTCATAGATAAGGCCGCCATTAATCGGGGTGTCCTTCAAAACCTAATCTTATCAATTA 3535 Query 185 ACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCA-CTTTCG 243 | | |||| ||| || ||| || ||||||| | |||||| | |||| | | ||| Sbjct 3534 AGCAAATCAGTTATCCAGCCGACATCGGGCAGACATCACACTCAATACTTTGATATTTTA 3475 Query 244 TGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCG 278 | ||||||||||||| |||||| | |||||||||| Sbjct 3474 TCTTTGCAGAGTGCTTTGTTTTAATTAAACAGTCG 3440 >seq83090 Length=1507 Score = 138 bits (152), Expect = 3e-30 Identities = 175/236 (74%), Gaps = 5/236 (2%) Strand=Plus/Minus Query 195 TTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGAG 254 |||||||||| ||||||||||||||||| || ||||| || |||| | | || ||| | Sbjct 1440 TTAACCTTCCAGCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACATCTTCGCACGG 1381 Query 255 TGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCA-TGAGCTTAC 313 ||||||||||||||||||||||| | |||| ||| ||||| || ||| | Sbjct 1380 ACCTGTGTTTTTAATAAACAGTCGCTTCTCTCTGGCCTCTGCGACCACCACCCCGCTCCC 1321 Query 314 GGAGCAA--GTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTG 371 |||| | |||||| || | ||||||||||||||||||| | | ||||| Sbjct 1320 ACCGCAAAGGGTGTTCACCAGGCATGGTCCCCCTTCTCCCGAAGTTACGGGGGCATTTTG 1261 Query 372 CCTAGTTCCTT-CCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426 || |||||||| || ||| ||||||| | | ||| ||||||||||||| ||||| Sbjct 1260 CCGAGTTCCTTAACCACGA-TTCTCTCGATCACCTGAGTATTCTCTACCCGACCAC 1206 >seq202179 Length=4533 Score = 118 bits (130), Expect = 3e-24 Identities = 199/282 (71%), Gaps = 11/282 (4%) Strand=Plus/Minus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 || |||| |||| |||||| ||| ||||||||||||||| | |||||||| Sbjct 4162 TAAACTGTATCTGCACAGCTATTCCAATTTCACTGAGTCAATCATAGAGACAGCTGTTGT 4103 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTAC-CTTAGG 125 |||||||| |||||| |||| | | | | ||| | | ||||| |||||||||| ||||| Sbjct 4102 ATCGTTACACCATTCATGCAAGACCGCATTTAACGGCCAAGGCATTTCGCTACTTTTAGG 4043 Query 126 ACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGT----TAG 181 ||| | | |||| ||||||| || ||||||| ||| || | | | || || Sbjct 4042 ACCCTCA-CGTTAAGGCCGCCTTTAACCGGGGTTTCCGTCGACATCAAATAGTATTATAT 3984 Query 182 CTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTT 241 ||| | || |||||| |||||||||||||| | |||| ||||| | | ||| Sbjct 3983 TTAATTCTCTCTGTTAACCAGCCGGCACCGGGCAGATATTACACTTTATACATAGATTTT 3924 Query 242 --CGTGTTT--GCAGAGTGC-TGTGTTTTTAATAAACAGTCG 278 | ||| ||| ||||| |||||||| | |||||||||| Sbjct 3923 TAAATCTTTCAGCAAAGTGCTTGTGTTTTAATTAAACAGTCG 3882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1258221462272