Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq201740 399 5e-109 seq83090 129 1e-27 seq175310 96.9 7e-18 seq68454 82.4 2e-13 >seq201740 Length=8247 Score = 399 bits (442), Expect = 5e-109 Identities = 310/368 (84%), Gaps = 7/368 (2%) Strand=Plus/Plus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 || || |||||||||| || | || |||||||||||||||| | ||||||| | || Sbjct 1042 TAACCTGCATCTTCACAGGTACTAAGATTTCACCGAGTCTATAGCCGAGACAGCGTCCGG 1101 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| Sbjct 1102 ATCGTTACGCCTTTCGTGCGGGTCAGAACTTACCTGACAAGGAATTTCGCTACCTTAGGA 1161 Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAAC 180 ||||||||||||||||||||||| |||||||||| |||||| |||||| || | ||||| Sbjct 1162 CCGTTATAGTTACGGCCGCCGTTCACTGGGGCTTCAGTTCAAAGCTTCGCTTACGCTAAC 1221 Query 181 AGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACT 240 | ||| | ||||||||||||||| |||||||||||| | ||||||||||||||| ||||| Sbjct 1222 AAATCTCTTTAACCTTCCAGCACTGGGCAGGCGTCACCCCCTATACATCGTCTTACGACT 1281 Query 241 TAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCAT 300 ||||||| | ||||||||||| ||||||||||| || ||| ||| ||||| | |||| Sbjct 1282 TAGCAGAGAGCTGTGTTTTTGCTAAACAGTCGCCCGGACCTCTTCACTGCGAC---TCAT 1338 Query 301 A----GACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAA 356 | | || ||||||||| |||| ||||||||| ||||||| |||||||||| | | Sbjct 1339 ATTGCTATGAGCTCCCCTTCTCGCTAACTTACGGGGTTATTTTGCAGAGTTCCTTAGCTA 1398 Query 357 TAGTTCTC 364 ||||| || Sbjct 1399 TAGTTATC 1406 >seq83090 Length=1507 Score = 129 bits (142), Expect = 1e-27 Identities = 180/257 (70%), Gaps = 38/257 (15%) Strand=Plus/Minus Query 136 CCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTC----------TAACAGATC 185 ||||||||||||||||||||| ||| | ||||| | | |||| | || Sbjct 1503 CCGCCGTTTACTGGGGCTTAAATTCTCCGCTTCACCACCCCAAAAGGGTGTTAACGGGTC 1444 Query 186 CCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCA 245 | |||||||||||||||||||||||||||||| | ||||||||| ||| | ||| ||| Sbjct 1443 CTCTTAACCTTCCAGCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACATCTTCGCA 1384 Query 246 GAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCC----------- 294 |||||||||||| ||||||||||||| || ||||||| || Sbjct 1383 CGGACCTGTGTTTTTAATAAACAGTCGCTTCTCTCTGGCCTCTGCGACCACCACCCCGCT 1324 Query 295 --------------TG-TCA-TAGACA-GGCACCCCTTCTCCCTAAGTTACGGGGTCATT 337 || ||| || || || ||||||||||| ||||||||||| |||| Sbjct 1323 CCCACCGCAAAGGGTGTTCACCAGGCATGGTCCCCCTTCTCCCGAAGTTACGGGGGCATT 1264 Query 338 TTGCCGAGTTCCTTAAC 354 ||||||||||||||||| Sbjct 1263 TTGCCGAGTTCCTTAAC 1247 >seq175310 Length=6051 Score = 96.9 bits (106), Expect = 7e-18 Identities = 111/149 (74%), Gaps = 8/149 (5%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAG----TGCCCAAAT 62 |||||| ||| | ||| ||||||||| ||| | || | ||||||| ||| || Sbjct 5845 GCATCTGCACTGCTATTTCAATTTCACTGAGCCAATCCTCGAGACAGCTGTTGC----AT 5790 Query 63 CGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACC 122 ||||| | | ||| ||| || | | | ||| | | ||||||||||||||||||||||||| Sbjct 5789 CGTTAAGTCATTCATGCAGGACCGCATTTAACGGCCAAGGAATTTCGCTACCTTAGGACC 5730 Query 123 GTTATAGTTACGGCCGCCGTTTACTGGGG 151 |||||| || ||||||| || | |||| Sbjct 5729 CTTATAGGTAAGGCCGCCATTAATCGGGG 5701 >seq68454 Length=3912 Score = 82.4 bits (90), Expect = 2e-13 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 9 ATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTTAC 68 |||| ||| | ||| ||||||||| ||||| || | ||||||| ||||||| Sbjct 3706 ATCTGCACAGCTATTCCAATTTCACTGAGTCAATCATCGAGACAGCTGTTGTATCGTTAA 3647 Query 69 GCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATA 128 || ||| ||| | | | | ||| | | ||||| ||||||||||||||||||| | ||| Sbjct 3646 ACCATTCATGCAAGACCGCATTTAACGGCCAAGGCATTTCGCTACCTTAGGACCCTCATA 3587 Query 129 GTTACGGCCGCCGTTTACTGGGG 151 | || ||||||| || | |||| Sbjct 3586 GATAAGGCCGCCATTAATCGGGG 3564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1060227222016