Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24]
204,516 sequences; 514,506,549 total letters
Query= AAMG01000753.1
Length=364
Score E
Sequences producing significant alignments: (Bits) Value
seq201740 399 5e-109
seq83090 129 1e-27
seq175310 96.9 7e-18
seq68454 82.4 2e-13
>seq201740
Length=8247
Score = 399 bits (442), Expect = 5e-109
Identities = 310/368 (84%), Gaps = 7/368 (2%)
Strand=Plus/Plus
Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60
|| || |||||||||| || | || |||||||||||||||| | ||||||| | ||
Sbjct 1042 TAACCTGCATCTTCACAGGTACTAAGATTTCACCGAGTCTATAGCCGAGACAGCGTCCGG 1101
Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 1102 ATCGTTACGCCTTTCGTGCGGGTCAGAACTTACCTGACAAGGAATTTCGCTACCTTAGGA 1161
Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAAC 180
||||||||||||||||||||||| |||||||||| |||||| |||||| || | |||||
Sbjct 1162 CCGTTATAGTTACGGCCGCCGTTCACTGGGGCTTCAGTTCAAAGCTTCGCTTACGCTAAC 1221
Query 181 AGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACT 240
| ||| | ||||||||||||||| |||||||||||| | ||||||||||||||| |||||
Sbjct 1222 AAATCTCTTTAACCTTCCAGCACTGGGCAGGCGTCACCCCCTATACATCGTCTTACGACT 1281
Query 241 TAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCAT 300
||||||| | ||||||||||| ||||||||||| || ||| ||| ||||| | ||||
Sbjct 1282 TAGCAGAGAGCTGTGTTTTTGCTAAACAGTCGCCCGGACCTCTTCACTGCGAC---TCAT 1338
Query 301 A----GACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAA 356
| | || ||||||||| |||| ||||||||| ||||||| |||||||||| | |
Sbjct 1339 ATTGCTATGAGCTCCCCTTCTCGCTAACTTACGGGGTTATTTTGCAGAGTTCCTTAGCTA 1398
Query 357 TAGTTCTC 364
||||| ||
Sbjct 1399 TAGTTATC 1406
>seq83090
Length=1507
Score = 129 bits (142), Expect = 1e-27
Identities = 180/257 (70%), Gaps = 38/257 (15%)
Strand=Plus/Minus
Query 136 CCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTC----------TAACAGATC 185
||||||||||||||||||||| ||| | ||||| | | |||| | ||
Sbjct 1503 CCGCCGTTTACTGGGGCTTAAATTCTCCGCTTCACCACCCCAAAAGGGTGTTAACGGGTC 1444
Query 186 CCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCA 245
| |||||||||||||||||||||||||||||| | ||||||||| ||| | ||| |||
Sbjct 1443 CTCTTAACCTTCCAGCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACATCTTCGCA 1384
Query 246 GAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCC----------- 294
|||||||||||| ||||||||||||| || ||||||| ||
Sbjct 1383 CGGACCTGTGTTTTTAATAAACAGTCGCTTCTCTCTGGCCTCTGCGACCACCACCCCGCT 1324
Query 295 --------------TG-TCA-TAGACA-GGCACCCCTTCTCCCTAAGTTACGGGGTCATT 337
|| ||| || || || ||||||||||| ||||||||||| ||||
Sbjct 1323 CCCACCGCAAAGGGTGTTCACCAGGCATGGTCCCCCTTCTCCCGAAGTTACGGGGGCATT 1264
Query 338 TTGCCGAGTTCCTTAAC 354
|||||||||||||||||
Sbjct 1263 TTGCCGAGTTCCTTAAC 1247
>seq175310
Length=6051
Score = 96.9 bits (106), Expect = 7e-18
Identities = 111/149 (74%), Gaps = 8/149 (5%)
Strand=Plus/Minus
Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAG----TGCCCAAAT 62
|||||| ||| | ||| ||||||||| ||| | || | ||||||| ||| ||
Sbjct 5845 GCATCTGCACTGCTATTTCAATTTCACTGAGCCAATCCTCGAGACAGCTGTTGC----AT 5790
Query 63 CGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACC 122
||||| | | ||| ||| || | | | ||| | | |||||||||||||||||||||||||
Sbjct 5789 CGTTAAGTCATTCATGCAGGACCGCATTTAACGGCCAAGGAATTTCGCTACCTTAGGACC 5730
Query 123 GTTATAGTTACGGCCGCCGTTTACTGGGG 151
|||||| || ||||||| || | ||||
Sbjct 5729 CTTATAGGTAAGGCCGCCATTAATCGGGG 5701
>seq68454
Length=3912
Score = 82.4 bits (90), Expect = 2e-13
Identities = 104/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 9 ATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTTAC 68
|||| ||| | ||| ||||||||| ||||| || | ||||||| |||||||
Sbjct 3706 ATCTGCACAGCTATTCCAATTTCACTGAGTCAATCATCGAGACAGCTGTTGTATCGTTAA 3647
Query 69 GCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATA 128
|| ||| ||| | | | | ||| | | ||||| ||||||||||||||||||| | |||
Sbjct 3646 ACCATTCATGCAAGACCGCATTTAACGGCCAAGGCATTTCGCTACCTTAGGACCCTCATA 3587
Query 129 GTTACGGCCGCCGTTTACTGGGG 151
| || ||||||| || | ||||
Sbjct 3586 GATAAGGCCGCCATTAATCGGGG 3564
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1060227222016
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |