Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq201740 511 1e-142 seq171796 91.5 4e-16 seq175310 84.2 7e-14 >seq201740 Length=8247 Score = 511 bits (566), Expect = 1e-142 Identities = 412/494 (83%), Gaps = 14/494 (3%) Strand=Plus/Minus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66 |||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||| | Sbjct 3956 CGCAAGAGTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGCGGAGCATGTGGAT 3897 Query 67 TAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCC-CTCTAGAG 125 |||||||| ||||||||||||||||||||| |||||||| | || || ||||| Sbjct 3896 TAATTCGATGCAACGCGAAGAACCTTACCAGGGCTTGACATACCTTGCGAAGCTATAGAG 3837 Query 126 ATAGAGGTTTCCCCTTCGGGGG--ACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTC 183 ||| || | | || ||| | ||||||| ||||||||||||||||| || Sbjct 3836 ATATAG---------TAGAGGTTAACAAGGATACAGGTGGTGCATGGTTGTCGTCAGTTC 3786 Query 184 GTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCAT 243 ||||||||||||||| |||||||| | ||||||| |||||||||| ||||||||||| Sbjct 3785 GTGTCGTGAGATGTTTGGTTAAGTTCAGCAACGAACGCAACCCTTGTCCTTAGTTGCCAG 3726 Query 244 CATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGAC 303 |||||||||||| |||||||| |||||| ||| || | |||||||||||||||||| Sbjct 3725 CATTAAGTTGGGGACTCTAAGGAGACTGCTAGTGT-AAGCTAGAGGAAGGTGGGGACGAC 3667 Query 304 GTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAA 363 |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| Sbjct 3666 GTCAAATCATCATGCCCCTTATGACCTGGGCTACACACGTGCTACAATGGCTGATACAAA 3607 Query 364 GGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAG 423 | | || |||||||||||||||||||||| || ||||| ||||||| ||||||| || Sbjct 3606 GAGTCGCTAAACCGCGAGGTCAAGCAAATCTCAAAAAGTCAGTCTCAGTCCGGATTGAAG 3547 Query 424 TCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGC-ATGCTACGG 482 |||||||||||||| |||||| ||| ||||||||||||| |||||||| | ||| ||| Sbjct 3546 TCTGCAACTCGACTTCATGAAGTCGGAGTCGCTAGTAATCGCAGATCAGCAACGCTGCGG 3487 Query 483 TGAATACGTTCCCG 496 |||||||||||||| Sbjct 3486 TGAATACGTTCCCG 3473 >seq171796 Length=1957 Score = 91.5 bits (100), Expect = 4e-16 Identities = 136/192 (71%), Gaps = 1/192 (1%) Strand=Plus/Minus Query 296 GGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGAC 355 ||||| | | ||| |||||||| || | || | ||||||| | |||||| ||| | | Sbjct 1602 GGGACTAAGACAAGTCATCATGGCCATAATATTGTGGGCTATAGACGTGCCACACATGCC 1543 Query 356 AATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCG 415 ||||||||| || | | | | | ||| |||||| ||| | | | | | | Sbjct 1542 TTTACAAAGGGATGCTATATTGTAAAATGGAGCTAATCCCCAAAATAGGATATAATAT-G 1484 Query 416 GATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCAT 475 |||||||||||| |||||||||| ||||| ||||| ||||||||||| |||| || Sbjct 1483 GATTGTAGTCTGTAACTCGACTACATGAATAAGGAATTACTAGTAATCGTGAATCACCAC 1424 Query 476 GCTACGGTGAAT 487 | ||||||||| Sbjct 1423 GTCACGGTGAAT 1412 >seq175310 Length=6051 Score = 84.2 bits (92), Expect = 7e-14 Identities = 130/182 (71%), Gaps = 3/182 (2%) Strand=Plus/Plus Query 306 CAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAGG 365 ||| |||||||| || | || | ||||||| | ||||| ||| ||| ||||| | Sbjct 340 CAAGTCATCATGGCCATCATATTGTGGGCTATAGGCGTGCCACACATACCAAAACAAAAG 399 Query 366 GCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTC 425 | || | | | || | ||| || || |||| ||| || | | ||||||||||| Sbjct 400 GATGCAATATTGTGAAATGGAGCTAAACCT-TAAAATTGG-CTAA-TAAGGATTGTAGTC 456 Query 426 TGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGA 485 || |||||||||||||||| ||||| ||||||||||| |||| || | ||||||| Sbjct 457 TGTAACTCGACTATATGAATAAGGAATTACTAGTAATCGTGAATCACCACGTCACGGTGA 516 Query 486 AT 487 || Sbjct 517 AT 518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1500924079360