Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24]
204,516 sequences; 514,506,549 total letters
Query= AAMG01000811.1
Length=502
Score E
Sequences producing significant alignments: (Bits) Value
seq201740 511 1e-142
seq171796 91.5 4e-16
seq175310 84.2 7e-14
>seq201740
Length=8247
Score = 511 bits (566), Expect = 1e-142
Identities = 412/494 (83%), Gaps = 14/494 (3%)
Strand=Plus/Minus
Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66
|||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||| |
Sbjct 3956 CGCAAGAGTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGCGGAGCATGTGGAT 3897
Query 67 TAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCC-CTCTAGAG 125
|||||||| ||||||||||||||||||||| |||||||| | || || |||||
Sbjct 3896 TAATTCGATGCAACGCGAAGAACCTTACCAGGGCTTGACATACCTTGCGAAGCTATAGAG 3837
Query 126 ATAGAGGTTTCCCCTTCGGGGG--ACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTC 183
||| || | | || ||| | ||||||| ||||||||||||||||| ||
Sbjct 3836 ATATAG---------TAGAGGTTAACAAGGATACAGGTGGTGCATGGTTGTCGTCAGTTC 3786
Query 184 GTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCAT 243
||||||||||||||| |||||||| | ||||||| |||||||||| |||||||||||
Sbjct 3785 GTGTCGTGAGATGTTTGGTTAAGTTCAGCAACGAACGCAACCCTTGTCCTTAGTTGCCAG 3726
Query 244 CATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGAC 303
|||||||||||| |||||||| |||||| ||| || | ||||||||||||||||||
Sbjct 3725 CATTAAGTTGGGGACTCTAAGGAGACTGCTAGTGT-AAGCTAGAGGAAGGTGGGGACGAC 3667
Query 304 GTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAA 363
|||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 3666 GTCAAATCATCATGCCCCTTATGACCTGGGCTACACACGTGCTACAATGGCTGATACAAA 3607
Query 364 GGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAG 423
| | || |||||||||||||||||||||| || ||||| ||||||| ||||||| ||
Sbjct 3606 GAGTCGCTAAACCGCGAGGTCAAGCAAATCTCAAAAAGTCAGTCTCAGTCCGGATTGAAG 3547
Query 424 TCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGC-ATGCTACGG 482
|||||||||||||| |||||| ||| ||||||||||||| |||||||| | ||| |||
Sbjct 3546 TCTGCAACTCGACTTCATGAAGTCGGAGTCGCTAGTAATCGCAGATCAGCAACGCTGCGG 3487
Query 483 TGAATACGTTCCCG 496
||||||||||||||
Sbjct 3486 TGAATACGTTCCCG 3473
>seq171796
Length=1957
Score = 91.5 bits (100), Expect = 4e-16
Identities = 136/192 (71%), Gaps = 1/192 (1%)
Strand=Plus/Minus
Query 296 GGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGAC 355
||||| | | ||| |||||||| || | || | ||||||| | |||||| ||| | |
Sbjct 1602 GGGACTAAGACAAGTCATCATGGCCATAATATTGTGGGCTATAGACGTGCCACACATGCC 1543
Query 356 AATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCG 415
||||||||| || | | | | | ||| |||||| ||| | | | | | |
Sbjct 1542 TTTACAAAGGGATGCTATATTGTAAAATGGAGCTAATCCCCAAAATAGGATATAATAT-G 1484
Query 416 GATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCAT 475
|||||||||||| |||||||||| ||||| ||||| ||||||||||| |||| ||
Sbjct 1483 GATTGTAGTCTGTAACTCGACTACATGAATAAGGAATTACTAGTAATCGTGAATCACCAC 1424
Query 476 GCTACGGTGAAT 487
| |||||||||
Sbjct 1423 GTCACGGTGAAT 1412
>seq175310
Length=6051
Score = 84.2 bits (92), Expect = 7e-14
Identities = 130/182 (71%), Gaps = 3/182 (2%)
Strand=Plus/Plus
Query 306 CAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAGG 365
||| |||||||| || | || | ||||||| | ||||| ||| ||| ||||| |
Sbjct 340 CAAGTCATCATGGCCATCATATTGTGGGCTATAGGCGTGCCACACATACCAAAACAAAAG 399
Query 366 GCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTC 425
| || | | | || | ||| || || |||| ||| || | | |||||||||||
Sbjct 400 GATGCAATATTGTGAAATGGAGCTAAACCT-TAAAATTGG-CTAA-TAAGGATTGTAGTC 456
Query 426 TGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGA 485
|| |||||||||||||||| ||||| ||||||||||| |||| || | |||||||
Sbjct 457 TGTAACTCGACTATATGAATAAGGAATTACTAGTAATCGTGAATCACCACGTCACGGTGA 516
Query 486 AT 487
||
Sbjct 517 AT 518
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1500924079360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |