Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq55454 235 9e-60 seq102835 219 7e-55 seq148971 163 5e-38 seq440 138 2e-30 seq57292 131 3e-28 seq22672 118 2e-24 seq138461 113 7e-23 seq190151 98.7 2e-18 >seq55454 Length=9146 Score = 235 bits (260), Expect = 9e-60 Identities = 204/248 (82%), Gaps = 4/248 (2%) Strand=Plus/Plus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||| Sbjct 7832 TCCTTCAGTGTAGCGCGCGTGCGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG 7891 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATA 131 | || ||| |||| | |||| | |||||||||||||| || | | | | Sbjct 7892 C-TCTGT-TTCGTGCGGCTAGGAGCCGCTTGTCCCTCTAAGAAGGGTGCAAGGTGC-AGA 7948 Query 132 GT-CGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAA 190 | | | | ||||||| ||| || |||||||||||||||||||||||||||||||| Sbjct 7949 GAACCACGCACCTATTTAATAGGCTAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAA 8008 Query 191 TCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATC 250 || |||||||||||||||||||||||||||||||| ||| |||||||||||||||| || Sbjct 8009 TCGCTCCACCAACTAAGAACGGCCATGCACCACCATCCACCGAATCAAGAAAGAGCTCTC 8068 Query 251 AATCTGTC 258 |||||||| Sbjct 8069 AATCTGTC 8076 >seq102835 Length=6735 Score = 219 bits (242), Expect = 7e-55 Identities = 199/247 (81%), Gaps = 3/247 (1%) Strand=Plus/Minus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||||| Sbjct 1492 TCCTTCAGTGTAGCGCGCGTGCGGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG 1433 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATA 131 | || ||| |||| | |||| | |||||||||||||| || | | | | Sbjct 1432 C-TCTGT-TTCGTGCGGCTAGGAGCCGCTTGTCCCTCTAAGAAGGGTGCAAGGTGC-AGA 1376 Query 132 GTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAAT 191 | | ||||||| ||| ||| ||||||||||||||||||||||||||||||||| Sbjct 1375 GAACCACGCACTATTTAAAAGGCTAAAGTCTCGTTCGTTATCGGAATTAACCAGACAAAT 1316 Query 192 CACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCA 251 | |||| ||||||||||| || |||||||||||| ||| ||||||||||||| || ||| Sbjct 1315 CCCTCCCCCAACTAAGAAGGGACATGCACCACCATCCACCGAATCAAGAAAGACCTCTCA 1256 Query 252 ATCTGTC 258 ||||||| Sbjct 1255 ATCTGTC 1249 >seq148971 Length=5908 Score = 163 bits (180), Expect = 5e-38 Identities = 191/250 (76%), Gaps = 6/250 (2%) Strand=Plus/Minus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAG-AACATCTAAGGGCATCACAGACCTGTTATT 70 ||| |||||| || | ||||||||| | || ||||| ||||||||||||||||||||| Sbjct 4388 TCCTTCAGTGCCACGTGGGTGCGGCCCCGGAATATCTATGGGCATCACAGACCTGTTATT 4329 Query 71 GCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCAT 130 | || || |||| | || | || ||||||| ||| || | || | Sbjct 4328 GT-TCTGTTTTGTCG-GGCTACGATCCGCTTGTTCCTCTAATAAGAGTGCAAGGTAC-AG 4272 Query 131 AGT-CGATGGGGCTATTTAGCAGGTTA-AGGTCTCGTTCGTTATCGGAATTAACCAGACA 188 || | | | ||||||| ||| || |||||||||| ||||||| ||||||||||||| Sbjct 4271 AGAACCACGCACCTATTTAATAGGCTAGAGGTCTCGTTAGTTATCGTAATTAACCAGACA 4212 Query 189 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTA 248 |||| ||||||||||||||||| |||||||||||| |||| |||||||||||||||| Sbjct 4211 AATCGTTCCACCAACTAAGAACGAACATGCACCACCATCCATGGAATCAAGAAAGAGCTC 4152 Query 249 TCAATCTGTC 258 |||||||||| Sbjct 4151 TCAATCTGTC 4142 >seq440 Length=5227 Score = 138 bits (152), Expect = 2e-30 Identities = 188/251 (75%), Gaps = 10/251 (4%) Strand=Plus/Minus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| |||||| ||||||||| | || | ||||||| ||||||||||||||||| |||| Sbjct 572 TCCTTCAGTGAAGCGCGCGTCTTGGCCCGGACATCTAGGGGCATCACAGACCTGT-ATTG 514 Query 72 CCTCAAACTTCCATT-GGCTG-GAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCA 129 | || || || |||| | ||||| | ||| |||||||||| || | Sbjct 513 C-TCTGTTTT--ATGCGGCTCAGGAGCCACTTGTCTCTCTAAGAAGGGTTTCAAGGTGCG 457 Query 130 TAGT-CGATGGGGCTATTT-AGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 || | | | |||||| | || || |||||||||||||||||| ||||||| | Sbjct 456 GAGAACCACGCACCTATTTGAATGGGCTAGAATCTCGTTCGTTATCGGAAATAACCAG-C 398 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 || | |||||||||||||||| ||||||||||||||| ||| |||||||| ||||||| Sbjct 397 GAACCGCTCCACCAACTAAGAAGGGCCATGCACCACCAACCACCGAATCAAG-AAGAGCT 339 Query 248 ATCAATCTGTC 258 |||||||||| Sbjct 338 CTCAATCTGTC 328 >seq57292 Length=7035 Score = 131 bits (144), Expect = 3e-28 Identities = 186/251 (74%), Gaps = 23/251 (9%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||| || Sbjct 695 TCAGTGTAGCGCGCGTGCGGCCCCAGACAGCTA-GGGCATCACAGACCTGTTATTGC-TC 752 Query 76 AAACTTCCATTG-GCTGGAAGCCAATAGTCCCTCTAAGAA-GCCAGCC----ACCAACCA 129 || | | | | | | ||| | || | |||||| || || | ||||| Sbjct 753 TG--TTTCGTGGCGGTAGGAGCTGCTTGTTC-TCTAAGGGTGCAAGGTGAAGAGAAACCA 809 Query 130 TAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAA 189 | ||||||| ||| || | |||||| |||||||||||||||||||||| Sbjct 810 --------GCACCTATTTATTAGGCTAGAGCCTCGTTTGTTATCGGAATTAACCAGACAA 861 Query 190 ATCACTCCACCAACTA--AGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 || |||||||| ||| ||||||| |||| ||| ||| ||| |||||||||||||||| Sbjct 862 -TCGCTCCACCA-CTACTAGAACGGACATGAACCTCCATCCACCGAATCAAGAAAGAGCT 919 Query 248 ATCAATCTGTC 258 |||||||||| Sbjct 920 CTCAATCTGTC 930 >seq22672 Length=4150 Score = 118 bits (130), Expect = 2e-24 Identities = 87/100 (87%), Gaps = 1/100 (1%) Strand=Plus/Plus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 ||||| |||||||||||||||||||| ||||||| |||||||| |||||||| ||||| Sbjct 1471 GTCTC-TTCGTTATCGGAATTAACCAAACAAATCGGTCCACCAATTAAGAACGAACATGC 1529 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||| ||| ||||||||||||| | |||||||||| Sbjct 1530 ACCACCATCCACCGAATCAAGAAAGAACGCTCAATCTGTC 1569 >seq138461 Length=3365 Score = 113 bits (124), Expect = 7e-23 Identities = 158/217 (73%), Gaps = 5/217 (2%) Strand=Plus/Minus Query 45 TCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTC 104 |||||||| |||||| |||||||||||| ||| |||| | | || | ||| Sbjct 1349 TCTAAGGGGATCACAAACCTGTTATTGCTGTGT--TTCGTGCGGCTAGGACCCGCTTGTC 1292 Query 105 CCTCTAAGAAGCCAGCCACCAACCATAGTCGATGGGGCTATT-TAGCAGGTTAAGGTCTC 163 ||||||||||| || | | | | | | ||||| || ||| || ||||| Sbjct 1291 CCTCTAAGAAGGGTGCAAAGTGCAAAGAACCACGCACCTATTATATTAGGCTAGAGTCTC 1232 Query 164 G-TTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAG-AACGGCCATGCACC 221 | ||| | ||| |||||||||||||||||| |||||||||| ||| ||||| | | |||| Sbjct 1231 GCTTCCTAATCAGAATTAACCAGACAAATCGCTCCACCAACCAAGAAACGGGCGTCCACC 1172 Query 222 ACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||| || |||||||||||||||| | |||||||| Sbjct 1171 ACCATCCTCCGAATCAAGAAAGAGCTCTTAATCTGTC 1135 >seq190151 Length=4228 Score = 98.7 bits (108), Expect = 2e-18 Identities = 97/118 (82%), Gaps = 7/118 (6%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACC-AGACAAATCACTCCACC 200 ||||||| ||| || || ||||||||||| ||||||||| ||||||||| ||||| | Sbjct 1388 CTATTTAATAGGCTAGAGTTCCGTTCGTTATCAGAATTAACCAAGACAAATCGCTCCA-C 1446 Query 201 AACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||| | | ||||||||| || ||| ||||| |||||||||| |||||||||| Sbjct 1447 AACTAAGGA--GGCATGCACCA-CATCCA-CGAATC-AGAAAGAGCTCTCAATCTGTC 1499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795221340996