Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq201740 131 2e-28 seq175310 75.2 1e-11 >seq201740 Length=8247 Score = 131 bits (144), Expect = 2e-28 Identities = 117/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 |||||||||| |||| ||||||||||| | |||||||||| | ||||| ||||||| | Sbjct 1017 CGGGGTCTTTCCGTCTAATCGCGGGTAACCTGCATCTTCACAGGTACTAAGATTTCACCG 1076 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 || | | ||||||| ||| || ||||||| |||| ||||||||| Sbjct 1077 AGTCTATAGCCGAGACAGCGTCCGGATCGTTACGCCTTTCGTGCGGGTCAGAACTTACCT 1136 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||||||||||||||||||||||| Sbjct 1137 GACAAGGAATTTCGCTACCTTAGGACCGTTA 1167 >seq175310 Length=6051 Score = 75.2 bits (82), Expect = 1e-11 Identities = 91/128 (71%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 46 GGTAATCGGCATCTTCACCGATACTACAATTTCACTGAGCTCACGGTTGAGACAGNNNNN 105 ||||| | |||||| ||| | || | |||||||||||||| | | ||||||| Sbjct 5853 GGTAAGCAGCATCTGCACTGCTATTTCAATTTCACTGAGCCAATCCTCGAGACAGCTGTT 5794 Query 106 NNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAG 165 || ||||| |||||| | | | ||| | | ||||||||||||||||||||| Sbjct 5793 GCATCGTTAAGTCATTCATGCAGGACCGCATTTAACGGCCAAGGAATTTCGCTACCTTAG 5734 Query 166 GACCGTTA 173 |||| ||| Sbjct 5733 GACCCTTA 5726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546115860684