Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq201740 215 1e-53 seq53773 134 3e-29 >seq201740 Length=8247 Score = 215 bits (238), Expect = 1e-53 Identities = 259/346 (75%), Gaps = 16/346 (5%) Strand=Plus/Plus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 ||||||||||||||||||||| | || |||||||||||| || ||||||||||||||| Sbjct 4413 CTTTACAATCCGAAGACCTTCAT-CAGTCACGCGGCATTG-CTCCATCAGGCTTTCGCCC 4470 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 ||||| || |||||| |||||||||| |||||| ||| ||| |||||||||||| ||| Sbjct 4471 ATTGTGAAAAATTCCCTACTGCTGCCTTCCGTAGAAGTTTGGGCCGTGTCTCAGTCCCAA 4530 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| | | ||||||||||||| | | |||| ||||| ||||||| ||||||||||| | Sbjct 4531 TGTGGCCGTTCATCCTCTCAGATCGGCTACGCATCGTTACCTTGGTAAGCCATTACCTTA 4590 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCC---CCTG 237 |||||||| |||| || | | | |||| ||||| ||| | | | ||| | | Sbjct 4591 CCAACTAGTTAATGCGCCGCATCCCCATCAATTAGCG-AAG--CAAATGCTCCTTTCATT 4647 Query 238 CTTTCTC-------CCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCC 290 ||| || | || |||||||||||||| ||||||| | ||||| || Sbjct 4648 ATTTATCATTGCAAATAAATAACATATGCGGTATTAGCTGTCGTTTCCAACAGTTATTCC 4707 Query 291 CCACTACCAGGCAGATT-CCTAGGCATTACTCACCCGTCCGCCGCT 335 |||||| || || || || | |||||||||||| |||| || Sbjct 4708 CCACTAAATGGTAGGTTAGATACGTGTTACTCACCCGTTCGCCACT 4753 >seq53773 Length=2002 Score = 134 bits (148), Expect = 3e-29 Identities = 162/222 (73%), Gaps = 14/222 (6%) Strand=Plus/Minus Query 114 GTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCAT 173 || |||||||| ||||||||||||||||||||| ||| |||||||| ||||||||||| | Sbjct 2002 GTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTACAGATCGTCGGCTTGGTGAGCCGT 1943 Query 174 TACCTCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCC 233 |||||||||||||| |||||| ||| |||||||| |||| | || Sbjct 1942 TACCTCACCAACTACCTAATCTGACGCGGGCTCATCCATCAGCGATA------AA----- 1894 Query 234 CCTGCTTTCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCA 293 |||| | |||||| ||| |||||||||| | |||| || ||||| || | Sbjct 1893 ---TCTTTTTTCCGTAGAGAATATACGGTATTAGCTTTTATTTCTAAAAGTTATTCCGTA 1837 Query 294 CTACCAGGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335 || || ||||||| | | ||||||||||||| ||| || Sbjct 1836 CTGATGGGTAGATTCCCACGTGTTACTCACCCGTCTGCCACT 1795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1069807588480