Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq83090 495 1e-137 seq201740 259 2e-66 seq35330 212 2e-52 seq118745 75.2 4e-11 >seq83090 Length=1507 Score = 495 bits (548), Expect = 1e-137 Identities = 367/426 (86%), Gaps = 2/426 (0%) Strand=Plus/Minus Query 1 TCGACTACGGAGCTTAATCCCCCGCAGTCTCACAGCCGCGCTCTCACTTCCCGGCATTCG 60 ||||| | | |||||| |||||| | ||||||| ||| ||||| | || | |||||||| Sbjct 426 TCGACAATGAAGCTTA-TCCCCCACTGTCTCACTGCCACGCTCACCCTGACTGGCATTCG 368 Query 61 GAGTTTGGTTGATTTCGGTAAGCTTGTGGGCCCCCTAGACCATCCAGT-GCTCTACCTCC 119 |||||| ||||| || |||| | || || ||| | ||||||||| ||||||||||| Sbjct 367 GAGTTTAGTTGACGTCAGTAACCCGGTAGGGCCCATCAGCCATCCAGTAGCTCTACCTCC 308 Query 120 GGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAG 179 | ||||| ||||| ||||||||||||||||||||||||||||||||||||||||| || Sbjct 307 AGCAAGAACCACGCAACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACAGAG 248 Query 180 TTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGT 239 |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| Sbjct 247 TTTGATTGGCCTTTCACCCCTACCCACAGCTCATCCCCTCAGTTTTCAACCTAAGTGGGT 188 Query 240 TCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTT 299 |||| |||||||| |||||||| ||||||| |||| |||||| ||||||||| ||||| Sbjct 187 TCGGGCCTCCACGACGTCTTACCGTCGCTTCACCCTGGCCATGGGTAGATCACTCCGCTT 128 Query 300 CGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCC 359 ||||||| | | || ||| ||||||||||||||||||||||||||||| ||||||| Sbjct 127 CGGGTCTAGGACACGCGACTACAACGCCCTATTCGGACTCGCTTTCGCTACGACTACCCC 68 Query 360 ACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCC 419 ||||||||||||||||| || || ||| |||||||||||||||||||||||||||||||| Sbjct 67 ACACGGGTTAACCTCGCCACGCACCGCTAACTCGCAGGCTCATTCTTCAAAAGGCACGCC 8 Query 420 GTCACC 425 ||||| Sbjct 7 ATCACC 2 >seq201740 Length=8247 Score = 259 bits (286), Expect = 2e-66 Identities = 319/433 (74%), Gaps = 15/433 (3%) Strand=Plus/Plus Query 134 GACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTT 193 |||||| |||||| || ||||||||||||||||||| | | ||| |||||| ||| Sbjct 2231 GACGCTAGTCCTAAAACTATATCGGGGAGAACCAGCTATCTCCAGGTTCGATTGGAATTT 2290 Query 194 CACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGC 253 |||| ||| ||||| ||||||| | |||||||| | || |||||||||||||| Sbjct 2291 CACCGCTAGCCACAAGTCATCCACGGTCTTTTCAACGAACGTTGGTTCGGTCCTCCATTA 2350 Query 254 GGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGT 313 | |||| ||||||||||| ||||| |||||||| | | ||||||||| | Sbjct 2351 ACTGTTACATTAACTTCAACCTGCTCATGGCTAGATCACCTGGTTTCGGGTCTACGACCA 2410 Query 314 GCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTAC-CCCACACGGGTTAACC 372 ||| | ||||||||||| | || |||||| || ||||| | | | |||||| Sbjct 2411 CATACT-AAACGCCCTATTCAGGCTTGCTTTCACTTCGGCTCCGTCTTTTCAACTTAACC 2469 Query 373 TCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACC 432 | || | || ||||||| |||||||||| ||||||||||||||||||| | Sbjct 2470 TTGC-ATGTAATCGTAACTCGCCGGCTCATTCTACAAAAGGCACGCCGTCACC-----CA 2523 Query 433 TAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCC 492 | || || |||||||| ||||| ||| |||||||||| ||||||||||||| Sbjct 2524 TTAACGG-------GCTCCGACTTGTTGTAAGCATATGGTTTCAGAAACTATTTCACTCC 2576 Query 493 CCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGA 552 || | ||||||||||||||||||||||||||||||| || | |||||||| | | Sbjct 2577 CCTCTCGGGGTACTTTTCACCTTTCCCTCACGGTACTGGTTCACTATCGGTAATTGGTTA 2636 Query 553 GTATTTAGGCTTA 565 |||||||| |||| Sbjct 2637 GTATTTAGCCTTA 2649 >seq35330 Length=4946 Score = 212 bits (234), Expect = 2e-52 Identities = 172/205 (84%), Gaps = 5/205 (2%) Strand=Plus/Plus Query 396 GGCTCATTCTTCAAAAGGCACGCCGTCACCTGGT-ACCTAAAAGGCACTTCAGCTCCGAC 454 |||||||||||||||||||||||| ||||| ||| || | ||| |||| ||| Sbjct 1 GGCTCATTCTTCAAAAGGCACGCCATCACCCCACCACCAAAGATGCAAG---GCTCTGAC 57 Query 455 GGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCT 514 |||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||| Sbjct 58 GGATTGTAAGCACATGGTTTCAGGTACTATTTCACTCCCCTCCCGGGGTACTTTTCACCA 117 Query 515 TTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGT 574 |||||||||||||| | ||||||||||||||||| | ||||||||| |||| |||||||| Sbjct 118 TTCCCTCACGGTAC-TATCCGCTATCGGTCACCAGGAAGTATTTAGCCTTACCGGGTGGT 176 Query 575 CCCGCCAGATTCACACGAAATTTCA 599 ||| | | |||| || |||||| Sbjct 177 CCCCCTATGTTCAAACAGGATTTCA 201 >seq118745 Length=1145 Score = 75.2 bits (82), Expect = 4e-11 Identities = 55/64 (86%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 255 GTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTG 314 |||||||| ||||||| |||| |||||| ||||||||| |||||||||||| || | || Sbjct 1082 GTCTTACCGTCGCTTCACCCTGGCCATGGGTAGATCACTCCGCTTCGGGTCTAGAACATG 1141 Query 315 CCAC 318 |||| Sbjct 1142 CCAC 1145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1813882717184