Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq201740 239 1e-60 seq35330 150 4e-34 >seq201740 Length=8247 Score = 239 bits (264), Expect = 1e-60 Identities = 297/393 (76%), Gaps = 14/393 (4%) Strand=Plus/Plus Query 30 TTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGCCC 89 ||||||||| || |||||||||||||| | | | ||||| | ||| |||||||| | Sbjct 2319 TTTTCAACGAACGTTGGTTCGGTCCTCCATTAACT-GTTACATTAACTT-CAACCTGCTC 2376 Query 90 ATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCGACTAGACGCCCTAGTAAGAC 149 || || |||||| || ||||| |||||||| || | |||| |||||||| | || | Sbjct 2377 AT-GGCTAGATCACCTGGTTT-CGGGTCTACGACC-ACATACTAAACGCCCTATTCAGGC 2433 Query 150 TCGCTTTTCGCTACGCCTCCC-CTATTCGGTTAAGCTTTGCCACTGAAAATAAGTCGCTG 208 | ||||| | || || |||| || ||| | | | |||| | | ||| |||| | Sbjct 2434 TTGCTTT-CACTTCGGCTCCGTCTTTTCAACTTAACCTTGCATGTAATCGTAACTCGCCG 2492 Query 209 ACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTCCCACTGCTTGTACGCA 268 | |||| ||||||||| |||| |||||||| || | |||||| ||| ||||| ||| Sbjct 2493 GCTCATTCTACAAAAGGCACGCCGTCACCCATTAACG--GGCTCCGACTTGTTGTAAGCA 2550 Query 269 TACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGG 328 || |||||||| | |||||||||||||||||| ||||| |||||| |||||||||||||| Sbjct 2551 TATGGTTTCAGAAACTATTTCACTCCCCTCTC-GGGGTACTTTTCACCTTTCCCTCACGG 2609 Query 329 TACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTT--GGAGGATGGTCCCCCCATA 386 |||| ||||||||||||| | | |||||||||||||| | || ||||| | || | Sbjct 2610 TACTGGTTCACTATCGGTAATTGGTTAGTATTTAGCCTTACGCAG--TGGTCTGCGCAAA 2667 Query 387 TTCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419 ||| ||||| ||| | ||||| || | ||||| Sbjct 2668 TTCCGACAAGGTTCCACGTGCCTCGCCGTACTC 2700 >seq35330 Length=4946 Score = 150 bits (166), Expect = 4e-34 Identities = 166/216 (77%), Gaps = 10/216 (5%) Strand=Plus/Plus Query 212 CATTATACAAAAGGTACGCAGTCACCCAAC----AAAG-TG---GGCTCCCACTGCTTGT 263 |||| | ||||||| |||| |||||| || |||| || ||||| || | |||| Sbjct 5 CATTCTTCAAAAGGCACGCCATCACCCCACCACCAAAGATGCAAGGCTCTGACGGATTGT 64 Query 264 ACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCT 323 | ||| | ||||||||| |||||||||||||||| ||||||| |||||| || |||||| Sbjct 65 AAGCACATGGTTTCAGGTACTATTTCACTCCCCTC-CCGGGGTACTTTTCACCATTCCCT 123 Query 324 CACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCC 383 |||||||||| | | |||||||||| | ||||||||||||| || ||||||||| Sbjct 124 CACGGTACTA-TCCGCTATCGGTCACCAGGAAGTATTTAGCCTTACCGGGTGGTCCCCCT 182 Query 384 ATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419 || |||| ||| |||| |||| ||| | ||||| Sbjct 183 ATGTTCAAACAGGATTTCACGTGTCCCGCCTTACTC 218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1239060729344