Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq201740 223 7e-56 seq53773 163 6e-38 >seq201740 Length=8247 Score = 223 bits (246), Expect = 7e-56 Identities = 238/312 (76%), Gaps = 7/312 (2%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| ||||||| |||| ||||||||| || || ||| |||||||||| |||||| Sbjct 4445 GGCATTGCTCCATCAGGCTTTCGCCCATTGTGAAAAATTCCCTACTGCTGCCTTCCGTAG 4504 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||| ||||||||||||||||||||||||||||||||| |||||||| ||||||| || Sbjct 4505 AAGTTTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCATCCTCTCAGATCGGCTACGCAT 4564 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 ||| |||||| || |||| || |||||||| |||| ||||| |||||| | | Sbjct 4565 CGTTACCTTGGTAAGCCATTACCTTACCAACTAGTTAATGCGCCGCATCCCCATCAATTA 4624 Query 181 GCGA--TAAAT----CTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTA 234 |||| |||| |||| | | | ||| | | ||| |||||||||||| Sbjct 4625 GCGAAGCAAATGCTCCTTTCATTATTTATCATTGCAAATAAATAACA-TATGCGGTATTA 4683 Query 235 GCGTTCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCC 294 || |||||||||| |||||||| | || || || ||||| ||||||||||||||| Sbjct 4684 GCTGTCGTTTCCAACAGTTATTCCCCACTAAATGGTAGGTTAGATACGTGTTACTCACCC 4743 Query 295 GTCCGCCACTAA 306 || ||||||||| Sbjct 4744 GTTCGCCACTAA 4755 >seq53773 Length=2002 Score = 163 bits (180), Expect = 6e-38 Identities = 171/227 (75%), Gaps = 17/227 (7%) Strand=Plus/Minus Query 80 GTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGTGGGCTAT 139 |||||| |||||| | ||| |||||||| || ||||| |||||||||||||||| || | Sbjct 2002 GTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTACAGATCGTCGGCTTGGTGAGCCGT 1943 Query 140 TATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGCGATAAATCTTTGGTCAA 199 || |||||||||||||||||| | |||| || |||| |||||||||||||||| Sbjct 1942 TACCTCACCAACTACCTAATCTGACGCGGGCTCATCCATCAGCGATAAATCTTT------ 1889 Query 200 AGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTCGTTTCCAAACGTTATTCCA 259 ||| || | ||| |||||||||| || |||| ||| |||||||| Sbjct 1888 ----------TTTCCGTAGAGAATATACGGTATTAGCTTTTATTTCTAAAAGTTATTCCG 1839 Query 260 CTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGCCACTAA 306 |||| || || || | ||||||||||||||||||| |||||||| Sbjct 1838 TACTGATGGGTAGATT-CCCACGTGTTACTCACCCGTCTGCCACTAA 1793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 996358112256