Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq83090 394 2e-107 seq201740 233 4e-59 >seq83090 Length=1507 Score = 394 bits (436), Expect = 2e-107 Identities = 350/443 (79%), Gaps = 45/443 (10%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 |||||||||||||||||||||||||||| ||||||| ||||||||| || | | | || Sbjct 864 CGACTACGCCTGTCGGCCTCGCCTTAGGTCCCGACTTACCCAGGGCGGATTAGCCTAGCC 805 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACACGCTACTCATGCCTG 120 ||||||||||||| | ||| ||||||| ||| |||||||| ||||||||||||||| Sbjct 804 CTGGAACCCTTGGTCATCCGGTGGACGGGTTTCTCACCCGTCTTTCGCTACTCATGCCTG 745 Query 121 CATTCTCACTCGCATCAACTCCACCACACAGTCAC-CCGGCAGCTTCACCACTGACACGA 179 |||||||||||| | ||||||||| | |||| ||||| |||||||| |||||| Sbjct 744 CATTCTCACTCGAACAGCCTCCACCACTCGTTCACTCCGGC-GCTTCACCGGCAACACGA 686 Query 180 CGCTCCCCTACCCAACCACAC--------------------------------------A 201 |||||||||||||| |||||| | Sbjct 685 CGCTCCCCTACCCACCCACACCACCACACACCCACCCGCAGGCGGACATGAGTGTTCATA 626 Query 202 GGT---TGCCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCA 258 || |||| | |||||||||| |||| |||||||||||||||||||||| |||||| Sbjct 625 TGTGAGTGCCGCGGCTTCGGCGGTGTACTTGAGCCCCGCTACATTATCGGCGCAGAATCA 566 Query 259 CTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTG 318 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 565 CTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCTAAGCCAACCTCCTG 506 Query 319 GTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCAC-CACTTAGGGGCCTTAGCTGA 377 ||||||| ||||||| ||||||||||||||| || ||| | |||||||||||||| ||| Sbjct 505 GTTGTCTTCGCAACTGAACATCCTTTCCCACTTAG-CACACGCTTAGGGGCCTTAGTTGA 447 Query 378 TGATCTGGGCTGTTTCCCTCTCG 400 || |||||||||||||||||||| Sbjct 446 TGGTCTGGGCTGTTTCCCTCTCG 424 >seq201740 Length=8247 Score = 233 bits (258), Expect = 4e-59 Identities = 305/418 (73%), Gaps = 22/418 (5%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| |||||||||||||||| || |||| |||| ||| ||| ||| | || Sbjct 1688 CGACTACGCCTTTCGGCCTCGCCTTAGGTCCTGACTAACCCTGGGTGGACGAACCTAGCC 1747 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACACGCTACTCATGCCTG 120 | |||| |||||| ||||||| |||||| |||| ||| || |||||| ||| | Sbjct 1748 CAGGAAACCTTGGTCAATCGGCATGAAGGATTCTCACCT-TCAATCGTTACTCACGCCGG 1806 Query 121 CATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGC-AGCTTCACCACTGACACGA 179 |||||||||| | |||||| | | || | | | | |||| | | || || Sbjct 1807 CATTCTCACTTCTAAACGCTCCACTAGTCCTTC--CGGTCTAACTTCGTCGCAGATTAGA 1864 Query 180 -CGCTCCCCTACCC--------------AACCACACAGGTTG--CCACAGCTTCGGCGGA 222 |||||||||||| || || | | | | ||| |||||||| | Sbjct 1865 ACGCTCCCCTACCGCCCACAATATATGTAAACATATATATAGACCCATAGCTTCGGTACA 1924 Query 223 TAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCAC 282 |||| |||||| |||||| || |||| |||||| | ||| |||||||| |||||||| Sbjct 1925 ATGCTTA-GCCCCGGTACATTTTCCGCGCAGAATCATTCGACTAGTGAGCTGTTACGCAC 1983 Query 283 TCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCT 342 ||||| ||||||||||||||| ||||||||||||| | ||||| ||| |||||||| | Sbjct 1984 TCTTTAAAGGATGGCTGCTTCTAAGCCAACCTCCTAGCTGTCTGAACAATTCCACATCGT 2043 Query 343 TTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 || ||||| || | || ||| |||||||||||||||||||||||||||||| || Sbjct 2044 TTTCCACTTAGCATTGATTTGGGGACCTTAGCTGATGATCTGGGCTGTTTCCCTCACG 2101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1175191619584