Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq201740 264 2e-68 seq174091 75.2 2e-11 >seq201740 Length=8247 Score = 264 bits (292), Expect = 2e-68 Identities = 226/278 (81%), Gaps = 1/278 (0%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||||||||||| ||| || ||||||| | | |||| | ||||||||||||||||||| Sbjct 4071 CCCACGCTTTCGTGCCACAACGTCAGTAATAGGCCAGTTAGCCGCCTTCGCCACTGGTGT 4130 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||| | |||||||||||||| |||||||||||| | |||||| | ||||||| || Sbjct 4131 TCCTTCATATATCTACGCATTCCACCGCTACACATGAAATTCCACTAACCTCTCCTATAC 4190 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180 || || || |||||| || || || || ||||||||||| || ||| || || |||| Sbjct 4191 TCTAGTAATGTAGTTTCCAAGGC-GGTTAGGGGTTGAGCCCCTAAATTTAACCTCAGACT 4249 Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240 ||| ||| |||| | | |||||| |||||||| |||||| |||||||| |||||| Sbjct 4250 TGCAAAACCGTCTACGCACGCTTTACGCCCAATAATTCCGGACAACGCTTGTACCCTACG 4309 Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTT 278 |||||||||||||||||||||||||||||||||||||| Sbjct 4310 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTT 4347 >seq174091 Length=1262 Score = 75.2 bits (82), Expect = 2e-11 Identities = 58/69 (84%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 199 CCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGG 258 ||||||| |||||||||| | ||||| || | | |||||||||||||||| ||||||| Sbjct 203 CCCTTTAAACCCAATAAAGATGAATAACACTAGTCTCCTACGTATTACCGCGACTGCTGG 262 Query 259 CACGTAGTT 267 |||||| || Sbjct 263 CACGTATTT 271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 827157941036