Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq201740 201 3e-49 seq53773 116 9e-24 >seq201740 Length=8247 Score = 201 bits (222), Expect = 3e-49 Identities = 159/191 (83%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 4 CTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 |||||||| |||||| ||||| ||| |||||||||| ||| |||||||||| ||||||| Sbjct 4413 CTTTACAATCCGAAGACCTTCATCAGTCACGCGGCATTGCTCCATCAGGCTTTCGCCCAT 4472 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 |||| || |||||| |||||||||| |||||| ||| ||| |||||||||||| ||| || Sbjct 4473 TGTGAAAAATTCCCTACTGCTGCCTTCCGTAGAAGTTTGGGCCGTGTCTCAGTCCCAATG 4532 Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183 |||| | ||||||||||||| | |||| | ||||| ||| ||| ||||||||| || Sbjct 4533 TGGCCGTTCATCCTCTCAGATCGGCTACGCATCGTTACCTTGGTAAGCCATTACCTTACC 4592 Query 184 AACTAGCTAAT 194 |||||| |||| Sbjct 4593 AACTAGTTAAT 4603 >seq53773 Length=2002 Score = 116 bits (128), Expect = 9e-24 Identities = 209/304 (69%), Gaps = 26/304 (9%) Strand=Plus/Minus Query 115 GTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCAT 174 || |||||||||||| |||||||||||||||||||| |||||||| || |||| ||| | Sbjct 2002 GTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTACAGATCGTCGGCTTGGTGAGCCGT 1943 Query 175 TACCCCGCCAACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCC 234 |||| | ||||||| |||||| | ||| |||||| || || | || Sbjct 1942 TACCTCACCAACTACCTAATCTGACGCGGGCTCATCCATCAGCGATA------AA----- 1894 Query 235 CCCTCTTTGGTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCT 294 ||||| || || ||| |||||||||| |||| | ||||| || Sbjct 1893 ---TCTTTTTTCCGTAGAGAATATACGGTATTAGCTTTTATTTCTAAAAGTTATTCCGTA 1837 Query 295 CCATCAGGCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAA--GCAGCA 352 | || || |||||| ||||||||||||| |||||| | | || | |||| Sbjct 1836 CTGATGGGTAGATTCCCACGTGTTACTCACCCGTCTGCCACT----AACTAATTGGAGCA 1781 Query 353 AGCTGCTTCCTGTTA--CCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATC 410 ||| || ||| ||||||||||||||||||||| || ||||||||||||| | Sbjct 1780 AGC----CCCAATTAGTCCGTTCGACTTGCATGTGTTAAGCACGCCGCCAGCGTTCGTCC 1725 Query 411 TGAG 414 |||| Sbjct 1724 TGAG 1721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1219899996416