Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq201740 316 6e-84 seq53773 104 7e-20 >seq201740 Length=8247 Score = 316 bits (350), Expect = 6e-84 Identities = 282/359 (79%), Gaps = 27/359 (8%) Strand=Plus/Minus Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227 |||| |||||||||||||||| |||||||||||| ||||| |||||||| |||||||| Sbjct 4603 ATTAACTAGTTGGTAAGGTAATGGCTTACCAAGGTAACGATGCGTAGCCGATCTGAGAGG 4544 Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287 ||| |||||||||||| |||||||||||| ||||||| |||||| |||||||||| ||| Sbjct 4543 ATGAACGGCCACATTGGGACTGAGACACGGCCCAAACTTCTACGGAAGGCAGCAGTAGGG 4484 Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTTC 347 ||| || |||||||||| ||||||||||| ||||| ||||||||| |||||||| |||| Sbjct 4483 AATTTTTCACAATGGGCGAAAGCCTGATGGAGCAATGCCGCGTGACTGATGAAGGTCTTC 4424 Query 348 GGGTCGTAAAGCTCTGTCCTCAAGGAAGA--------------------------TAATG 381 || | |||||| ||||| | | |||||| || | Sbjct 4423 GGATTGTAAAGGTCTGTTGTAAGGGAAGAAGTGCTAGAATAGGAAATGATTTTAGTATCG 4364 Query 382 ACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGG 441 || ||| | | || ||||| |||||||||||||||||||||||||||||||||||||| Sbjct 4363 ACCATACCTTACCAGAAAGCCACGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGG 4304 Query 442 GGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 | | |||||| |||||||||| | |||||||||| |||||||| ||||| ||||| Sbjct 4303 GTACAAGCGTTGTCCGGAATTA-TTGGGCGTAAAGCGTGCGTAGACGGTTTTGCAAGTC 4246 >seq53773 Length=2002 Score = 104 bits (114), Expect = 7e-20 Identities = 77/90 (86%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 158 CCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCG 217 |||||||| |||||| |||||||| ||||||||||| |||||| |||||||| ||||| | Sbjct 1913 CCCGCGTCAGATTAGGTAGTTGGTGAGGTAACGGCTCACCAAGCCGACGATCTGTAGCTG 1972 Query 218 ACCTGAGAGGGTGATCGGCCACATTGGAAC 247 |||||||| ||||| |||||| ||| || Sbjct 1973 GTCTGAGAGGATGATCAGCCACACTGGGAC 2002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1494537168384