Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24]
204,516 sequences; 514,506,549 total letters
Query= AAMG01002180.1
Length=500
Score E
Sequences producing significant alignments: (Bits) Value
seq201740 316 6e-84
seq53773 104 7e-20
>seq201740
Length=8247
Score = 316 bits (350), Expect = 6e-84
Identities = 282/359 (79%), Gaps = 27/359 (8%)
Strand=Plus/Minus
Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227
|||| |||||||||||||||| |||||||||||| ||||| |||||||| ||||||||
Sbjct 4603 ATTAACTAGTTGGTAAGGTAATGGCTTACCAAGGTAACGATGCGTAGCCGATCTGAGAGG 4544
Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287
||| |||||||||||| |||||||||||| ||||||| |||||| |||||||||| |||
Sbjct 4543 ATGAACGGCCACATTGGGACTGAGACACGGCCCAAACTTCTACGGAAGGCAGCAGTAGGG 4484
Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCCTTC 347
||| || |||||||||| ||||||||||| ||||| ||||||||| |||||||| ||||
Sbjct 4483 AATTTTTCACAATGGGCGAAAGCCTGATGGAGCAATGCCGCGTGACTGATGAAGGTCTTC 4424
Query 348 GGGTCGTAAAGCTCTGTCCTCAAGGAAGA--------------------------TAATG 381
|| | |||||| ||||| | | |||||| || |
Sbjct 4423 GGATTGTAAAGGTCTGTTGTAAGGGAAGAAGTGCTAGAATAGGAAATGATTTTAGTATCG 4364
Query 382 ACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGG 441
|| ||| | | || ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 4363 ACCATACCTTACCAGAAAGCCACGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGG 4304
Query 442 GGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500
| | |||||| |||||||||| | |||||||||| |||||||| ||||| |||||
Sbjct 4303 GTACAAGCGTTGTCCGGAATTA-TTGGGCGTAAAGCGTGCGTAGACGGTTTTGCAAGTC 4246
>seq53773
Length=2002
Score = 104 bits (114), Expect = 7e-20
Identities = 77/90 (86%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 158 CCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCG 217
|||||||| |||||| |||||||| ||||||||||| |||||| |||||||| ||||| |
Sbjct 1913 CCCGCGTCAGATTAGGTAGTTGGTGAGGTAACGGCTCACCAAGCCGACGATCTGTAGCTG 1972
Query 218 ACCTGAGAGGGTGATCGGCCACATTGGAAC 247
|||||||| ||||| |||||| ||| ||
Sbjct 1973 GTCTGAGAGGATGATCAGCCACACTGGGAC 2002
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1494537168384
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |