Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq83090 268 3e-69 seq201740 219 1e-54 >seq83090 Length=1507 Score = 268 bits (296), Expect = 3e-69 Identities = 356/485 (73%), Gaps = 12/485 (2%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGAC--AGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCA 59 |||||||||| |||||| |||||| | |||||||||| | ||||||||||||| Sbjct 87 CGAGTCCGAATAGGGCGTTGTAGTCGCGTGTCCTAGACCCGAAGCGGAGTGATCTACCCA 146 Query 60 TGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAA 119 |||||||| ||||| |||||| ||| | |||||| ||||||||||| | |||||||| Sbjct 147 TGGCCAGGGTGAAGCGACGGTAAGACGTCGTGGAGGCCCGAACCCACTTAGGTTGAAAAC 206 Query 120 TTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCT 179 | ||||||||||||||||||||||||||||||| || |||||| | |||||||||||| Sbjct 207 TGAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCCAATCAAACTCTGTGATAGCTGGTTCT 266 Query 180 CTCCGAAAACTATTTAGGTAGTGCCTCAAGTATCACCATC-GGGGGTAGAGC-ACTGTTA 237 | |||||| |||||||| || | || | | || |||||||| |||| | Sbjct 267 CCCCGAAATGCATTTAGGTGCAGCGTTGCGTGGTTCTTGCTGGAGGTAGAGCTACTG-GA 325 Query 238 TGGCTAGGGGGTCATTGCGACTTACCAA--ACCATTGCAAACTCCGAATGCGCATCAGTT 295 ||||| ||| | | || |||| | | | | ||||||||||||| |||| Sbjct 326 TGGCTGATGGGCCCTACCGGGTTACTGACGTCAACT--AAACTCCGAATGCCAGTCAGGG 383 Query 296 TTACCGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGA 355 | | || || |||||| |||| | |||| | | | ||||||| || | || || Sbjct 384 TGAGCGTGGCAGTGAGACAGTGGGGGATAAGCTTCATTGTCGAGAGGGAAACAGCCCAGA 443 Query 356 CTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGA 415 | |||| |||||||||| || | ||||||| | || || || |||| |||| Sbjct 444 CCATCAACTAAGGCCCCTAAGCGTGTGCTAAGTGGGA--AAGGATGTTCAGTTGCGAAGA 501 Query 416 CAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAG 475 || | |||| |||||||| |||||||||| || || ||||||||||||| |||||||| | Sbjct 502 CAACCAGGAGGTTGGCTTAGAAGCAGCCA-TCCTTGAAAGAGTGCGTAATAGCTCACTGG 560 Query 476 TCGAG 480 || || Sbjct 561 TCAAG 565 >seq201740 Length=8247 Score = 219 bits (242), Expect = 1e-54 Identities = 370/520 (71%), Gaps = 17/520 (3%) Strand=Plus/Minus Query 32 GTAGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTG 91 ||||||||||||||| |||||||| ||||| |||| ||||| | |||||| || Sbjct 2405 GTAGACCCGAAACCAGGTGATCTAGCCATGAGCAGGTTGAAGTTAATGTAACAGTTAATG 2346 Query 92 GAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGG 151 |||| ||||||| || |||||||| | |||||| ||||| ||| ||||||| Sbjct 2345 GAGGACCGAACCAACGTTCGTTGAAAAGACCGTGGATGACTTGTGGCTAGCGGTGAAATT 2286 Query 152 CTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGG--TAGTGCCTCAAG 209 | || | ||| |||| ||||||||||||| |||| | |||||| ||| | | || Sbjct 2285 CCAATCGAACCTGGAGATAGCTGGTTCTCCCCGATATAGTTTTAGGACTAGCGTCAGAAT 2226 Query 210 TATCACCATCGGGGGTAGAGCACTGTTATGGCT-AGGGGGTCATTGCGACTTACCAAA-- 266 || | || || |||| ||| ||| ||| | | || || || ||| || Sbjct 2225 TAGTGCAAT-GGAGGTAAAGCTCTGA-ATGTATGATGGCCCCACCTCGGGGTACTGAATG 2168 Query 267 CCATTGCAAACTCCGAATGCGCATCAGTTTTACCGCGGG-AGTGAGGGCATGGGTGCTAA 325 | ||| ||||| ||||||| ||| ||| | | || ||| || ||||||| ||| Sbjct 2167 CAATT--AAACTGCGAATGC-CATT-GTTACATATCTGGCAGTCAGTCTATGGGTGATAA 2112 Query 326 GGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTA 385 ||||| || || |||| || | || || ||||||||||| ||| |||| | |||| Sbjct 2111 GGTCCATGGACGTGAGGGAAACAGCCCAGATCATCAGCTAAGGTCCCCAAATCAATGCTA 2052 Query 386 AGTTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCAT 445 ||| || ||||| || |||| | |||||||||||| |||||||| ||||||||||| Sbjct 2051 AGTGGAA--AACGATGTGGAATTGTTCAGACAGCTAGGAGGTTGGCTTAGAAGCAGCCAT 1994 Query 446 TCATTTAAAGAGTGCGTAACAGCTCACTAGTCG-AGGAGTCGGGCGTGGATAATAATCGG 504 | |||||||||||||||||||||||||||||| | || || ||| ||| ||| | | Sbjct 1993 CC-TTTAAAGAGTGCGTAACAGCTCACTAGTCGAATGATTC-TGCGCGGAAAATGTACCG 1936 Query 505 GTATTAAGTTGTCTACCGAAGCAGTGGGATCATTTATATG 544 | |||| | ||||||||| |||| || |||||| Sbjct 1935 GGGCTAAGCATTGTACCGAAGCTATGGGTCTATATATATG 1896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1686144497664