Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq35330 206 5e-51 seq73030 140 6e-31 seq201740 134 3e-29 >seq35330 Length=4946 Score = 206 bits (228), Expect = 5e-51 Identities = 194/244 (80%), Gaps = 10/244 (4%) Strand=Plus/Minus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 || ||| |||||||||||||||| | ||||||||||||||||| || ||||||| Sbjct 559 AGAGCATTTGGTGGATGCCTTGGCACTAGAAGGCGATGAAGGACGTAATACGCTGCGATA 500 Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 120 |||| |||||||| || || | ||||||||||| |||||||||||||||||||||| Sbjct 499 AGCTTCGGGGAGTT-GCGAATAAACTTTGATCCGAAGATTTCCGAATGGGGAAACCCA-- 443 Query 121 CCT------TTGGGTCATTGCATGCTGAATACATAGGTATGCAAAGCGAACGCGGCGAAC 174 ||| || ||| |||| || ||||||||||| ||| | || ||| | |||||| Sbjct 442 CCTAATTTATTAGGT-ATTGTATAGTGAATACATAGCTATATGAGGCAAACCCAGCGAAC 384 Query 175 TGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAG 234 ||||| ||||||||||||| |||||| || ||||||||||| ||| ||||||| |||| Sbjct 383 TGAAATATCTAAGTAGCTGGAGGAAAGGACATCAACCGAGACTCCGTTAGTAGTGACGAG 324 Query 235 CGAA 238 |||| Sbjct 323 CGAA 320 >seq73030 Length=1019 Score = 140 bits (154), Expect = 6e-31 Identities = 190/260 (73%), Gaps = 10/260 (4%) Strand=Plus/Plus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTAC-AGGCGATGAAGGACGTAGTAGCTTGCGAT 59 || || |||||||||||||||||| || | || ||||||||||||| | | |||||| Sbjct 536 AGAGCGCATGGTGGATGCCTTGGC-ATCAGGAGCCGATGAAGGACGTGGAAATCTGCGAT 594 Query 60 AAGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGG 119 |||| ||||||| | || | | |||||||| | | ||||||||||||||||| | Sbjct 595 AAGCCTCGGGGAGCCGGTAAGCGGGCGTTGATCCGAGGGTGTCCGAATGGGGAAACCCCG 654 Query 120 CCCTTTGGGTCATTG------CATG-CTGAATACATAGGTA-TGCAAAGCGAACGCGGCG 171 || | | | || | || |||||| ||||| || | |||||||| | Sbjct 655 CCACTCGTGAGGGTGGTGACCCGTGTCTGAATGTATAGGGCGTGTGGGGGGAACGCGGGG 714 Query 172 AACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGC 231 || |||||||||| |||| | ||||||| ||||| ||| |||||| ||||||||| Sbjct 715 AAGTGAAACATCTCAGTACCCGCAGGAAGAGAAAATAACAATGATTCCGGCAGTAGTGGC 774 Query 232 GAGCGAAATGGGATGAGCCT 251 |||||||| |||||||||| Sbjct 775 GAGCGAAACTGGATGAGCCT 794 >seq201740 Length=8247 Score = 134 bits (148), Expect = 3e-29 Identities = 184/252 (73%), Gaps = 9/252 (4%) Strand=Plus/Minus Query 8 ATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCG 67 |||||||||||||||| | || |||||||||||| | | ||||||||||| || Sbjct 3104 ATGGTGGATGCCTTGGAATTGGAAGACGATGAAGGACGCGATTACCTGCGATAAGCTTCG 3045 Query 68 GGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCC-GGCCCTTT- 125 ||||| | ||| | |||||||||| |||| ||||||||||||||||| |||| Sbjct 3044 GGGAG-CTGGAAATAAGCTTTGATCCGGAGATGTCCGAATGGGGAAACCCACTATCTTTA 2986 Query 126 ---GGGT--CATTGCATGCTGAATACATAGGTATGCAAAGCGA-ACGCGGCGAACTGAAA 179 | | | || | ||||| ||||| | |||| || || || | ||| ||||| Sbjct 2985 ATCAGATAGTACTGTACAATGAATTCATAGTTGTGCAGAGTGATACCTAGAGAATTGAAA 2926 Query 180 CATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAA 239 ||||| |||| || ||||||||||| | | | ||||||| ||||| ||||||||||| Sbjct 2925 CATCTTAGTACCTAGAGGAAAAGAAAGCGAATGCGATTCCCTTAGTAGCGGCGAGCGAAA 2866 Query 240 TGGGATGAGCCT 251 |||| ||||| Sbjct 2865 AGGGAGCAGCCT 2854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 916521725056