Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq201740 394 3e-107 seq83090 129 2e-27 seq175310 87.8 6e-15 >seq201740 Length=8247 Score = 394 bits (436), Expect = 3e-107 Identities = 427/565 (76%), Gaps = 12/565 (2%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 |||||||||| ||||||||||||||| ||||| | | || | ||| || ||||| || Sbjct 718 TCGACTTGTATGTCTCGCAGTCAAGCACCCTTTTACCTTTGCGCTCTACATATGATTTCC 777 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 | || |||||||||||||||||||||||||||| ||| ||||| |||||||||||| Sbjct 778 ATTCATATTGAGGGAACCTTTGGGCGCCTCCGTTACTCTTTAGGAGG-CAACCGCCCCAG 836 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCAC 180 ||||||||||||||||||||||||| | |||||| |||| | | |||||| | || Sbjct 837 TTAAACTACCCACCAGGCACTGTCCTTAGACCAGATTATGGTCTCAAGTTAGAATTTCAA 896 Query 181 TACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAGT 240 || | || ||||||| ||| ||||||| | |||||||| | |||| || Sbjct 897 TATAGCAAGGGTGGTATCCCAATGGTGACTCCATGCCTACTAGCGTCTGCATATCAACGT 956 Query 241 CTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC- 299 ||||||||||| || |||||| |||| || ||||| |||| | |||| ||| ||| Sbjct 957 CTCCCACCTATGCTGTACAAACTACACCAAAATTCAATATCAAGTTGTAGTAAAGCTCCA 1016 Query 300 CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCG 359 |||||||||| |||| |||| | ||| ||||||| || ||||| ||||||||| Sbjct 1017 CGGGGTCTTTCCGTCTAATCGCGGGTAACCTGCATCTTCACAGGTACTAAGATTTCACCG 1076 Query 360 GGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 419 | || | | |||||||| | |||||||||| ||||||| |||| ||||||||| Sbjct 1077 AGTCTATAGCCGAGACAGCGTCCGGATCGTTACGCCTTTCGTGCGGGTCAGAACTTACCT 1136 Query 420 GACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTC 479 ||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||| Sbjct 1137 GACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCACTGGGGCTTC 1196 Query 480 AATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCG 539 | || || || | || ||| || | || ||||||||||||||| | Sbjct 1197 AGTTCAAAGCTTCGCTTAC----------GCTAACAAATCTCTTTAACCTTCCAGCACTG 1246 Query 540 GGCAGGCGTCAGTCCGTATACCTCG 564 ||||||||||| || ||||| ||| Sbjct 1247 GGCAGGCGTCACCCCCTATACATCG 1271 >seq83090 Length=1507 Score = 129 bits (142), Expect = 2e-27 Identities = 96/110 (87%), Gaps = 2/110 (2%) Strand=Plus/Minus Query 456 ACCACCGCCGTTTACTGGGGCTTCAATTACCCGCCTCAC-ACACCACGTGGTGTGCTCAC 514 ||||||||||||||||||||||| |||| |||| |||| || ||| || ||| | || Sbjct 1507 ACCACCGCCGTTTACTGGGGCTTAAATTCTCCGCTTCACCACCCCAAAAGG-GTGTTAAC 1449 Query 515 GAGTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGTCCGTATACCTCG 564 | |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1448 GGGTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGTCCGTATACATCG 1399 >seq175310 Length=6051 Score = 87.8 bits (96), Expect = 6e-15 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 330 AGCATCTTTACTCGTACTGCAATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGT 389 ||||||| ||| || | ||||||||| | ||| | | |||||||| | | |||| Sbjct 5846 AGCATCTGCACTGCTATTTCAATTTCACTGAGCCAATCCTCGAGACAGCTGTTGCATCGT 5787 Query 390 TACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTT 449 || | ||||| |||||| | | | ||| | | ||||||||||||||||||||||| || Sbjct 5786 TAAGTCATTCATGCAGGACCGCATTTAACGGCCAAGGAATTTCGCTACCTTAGGACCCTT 5727 Query 450 ATAGTTACCACCGCCGTTTACTGGGG 475 |||| || ||||| || | |||| Sbjct 5726 ATAGGTAAGGCCGCCATTAATCGGGG 5701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1698918319616