Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq20354 132 4e-26 seq1065 120 2e-22 seq182417 109 4e-19 >seq20354 Length=4240 Score = 132 bits (146), Expect = 4e-26 Identities = 102/121 (84%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| |||||| |||||||| || ||| |||||||||| || |||||||||||||||| Sbjct 345 TGGAGCGTTTCAGTCAGGAGGTCCAGGTGACGGAGGCGCGCTGCTTCTACGGCTTCCAGA 404 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 | ||||| |||||||| ||||| ||||||||||| | |||||||| || ||||||| || Sbjct 405 TGGCCATCGAGAATGTGCACTCCGAGATGTACAGCCTCCTCATCGACACTTACATCAAGG 464 Query 61376 A 61376 | Sbjct 465 A 465 Score = 122 bits (134), Expect = 7e-23 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 61397 TGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATT 61456 ||||||| ||| | |||||||| || | ||| ||||||| || ||||| | || | Sbjct 1326 TGTTCAACGCCGTTGAGACGATGCCCTGCATTAAGAGGAAAGCAGACTGGGCACTGAACT 1385 Query 61457 GGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGG 61516 ||||| || | || |||||||| || || | | || ||||||| ||||||| Sbjct 1386 GGATCGGCAACCGGAGCGCCACATTTGGCGAGCGCATCGTCGCGTTTGCGGCCGTCGAGG 1445 Query 61517 GTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGC 61576 | | || ||| ||||||||||| | ||||| ||| ||||||| || ||||| |||| Sbjct 1446 GCATCTTCTTCTCGGGATCGTTTGCGTCCATCTTCTGGCTGAAGAAGCGGGGACTCATGC 1505 Query 61577 CCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGG 61618 |||| || ||||||||||| ||| | || || ||||||| Sbjct 1506 CCGGCCTCACCTTCAGCAACGAGCTCATCAGTCGAGACGAGG 1547 >seq1065 Length=2691 Score = 120 bits (132), Expect = 2e-22 Identities = 120/156 (77%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 66037 CTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCC 66096 |||||| || || || |||||||| | ||||||||||| || ||||| |||||||| Sbjct 1088 CTCGTCCGGCGCAGTGTACTCGACGACCTCGGTGCACAGGTTGCTGCACTTGATGGTGCC 1029 Query 66097 CAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCC 66156 | |||| || || ||||| ||||| ||||||||||||| ||||||||| ||||| Sbjct 1028 GAGGTTCTTCTGGTTGGACTTGCTGTTGCAGGCATCCTTGTACAGCATGTACGGGGTGCC 969 Query 66157 GGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAG 66192 ||||| | || ||||| | |||||||| ||| || Sbjct 968 CGTCTCTATCTGCGACTCCAGGATGGCGTACCACAG 933 >seq182417 Length=1593 Score = 109 bits (120), Expect = 4e-19 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 67061 GTCTGCTTGTGCATGTTGGAGATGGCGATACGGGCGGCCAGGACACCATAATCGGGATGT 67120 |||| |||||| | |||||||||||| || || || ||||||| |||| ||||| ||| Sbjct 992 GTCTCCTTGTGGAGGTTGGAGATGGCAATGCGTGCCGCCAGGATGGCATAGTCGGGGTGT 933 Query 67121 AGAGTCATCATACTGGCGGCAGTTTCAGCGGCCAAGGTATCAAGTTCAGCGGTAGTCACA 67180 ||| |||| | |||||||||||||| |||||| | || ||||| |||| ||||| Sbjct 932 TTCGTCGTCATCGTCGCGGCAGTTTCAGCCGCCAAGTTGTCCAGTTCGACGGTGGTCACG 873 Query 67181 CCAGGATACAGGCCA 67195 || || || |||||| Sbjct 872 CCGGGGTAGAGGCCA 858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396577046354240