Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_023503.1 Length=48800 Score E Sequences producing significant alignments: (Bits) Value seq191782 197 4e-46 >seq191782 Length=2906 Score = 197 bits (218), Expect = 4e-46 Identities = 275/381 (72%), Gaps = 6/381 (2%) Strand=Plus/Plus Query 2514 TAACAAATACCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGGACGGTTG 2573 ||| ||||| ||||| || | || ||||||||| ||| ||| || || || || | Sbjct 958 TAAAAAATATCCAATTATTTCAATTGAAGATGGTTTGGCTGAAGGTGATTGAGAAGGATT 1017 Query 2574 GAAATCTCTTACT-GAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTCTTCG 2632 |||| | ||| | ||| | |||||| | ||| | |||||||| || || |||| Sbjct 1018 TAAAT-TATTATTAGAAAAATCAGAAGGTAAATTCCAAGTTGTTGGTGATGATTTATTCG 1076 Query 2633 TAACTAA--CACTGCTTACCTTGAAAAAGGTATTGCAGAACACGCTGCTAACTCAATCCT 2690 | ||||| || ||| || || |||| ||| || ||| |||||| ||| | | Sbjct 1077 TTACTAATCCAAAAATTA--TTAAAGAAGGAATTATTAAAAACGTTGCTAATTCAGTATT 1134 Query 2691 TATCAAAGTTAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAA 2750 || ||| | || ||||| || || || ||||||||| | || ||||| |||||| | Sbjct 1135 AATTAAATTAAATCAAATTGGAACATTAACTGAAACTATGGAAGCTATTGAAATGTGTCA 1194 Query 2751 AGAAGCTGGATACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACAAT 2810 | ||||||| | || ||||||||||| || ||||| || |||||||||||| |||| || Sbjct 1195 AAAAGCTGGGTGAACGGCAGTAGTATCTCATCGTTCTGGGGAAACTGAAGATACAACGAT 1254 Query 2811 CGCTGATATTGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTAC 2870 ||||| | ||||| || ||| |||| |||||||| ||||||||| ||||| | || Sbjct 1255 TGCTGACTTAGCAGTAGCTTTTAATACTGGACAAATTAAAACAGGTTCAATGTCAAGAAC 1314 Query 2871 TGACCGTATTGCTAAATACAA 2891 ||| ||| |||| |||||||| Sbjct 1315 TGATCGTGTTGCAAAATACAA 1335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155659440850704