Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq152019 105 3e-17 seq39479 96.9 1e-14 >seq152019 Length=5168 Score = 105 bits (116), Expect = 3e-17 Identities = 137/183 (75%), Gaps = 10/183 (5%) Strand=Plus/Plus Query 449005 GGTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGTC-GGGC-GTCTCGCCGGCC 449062 ||||||||| || ||| | | || ||||||||||||| ||| |||| | | | | || | Sbjct 1977 GGTCATGCGGGAGGGGAACCCGTGGGGGTTCATGATGAGGTCTGGGCAGACACCCTGGTC 2036 Query 449063 GCGTTGAAGGGCATGTCCTCGGGGTTGACCACCAGGCCGTTGACGCCCTTCTGGCCGTGG 449122 || |||||||||||||||| | | | | | || || || ||||||||||||||| Sbjct 2037 GC--TGAAGGGCATGTCCTCCTGCTGGGCGATGAGCCCCACCACCCCCTTCTGGCCGTGG 2094 Query 449123 CGGCTGCAGAACTTGTCCCCCTGCTCGG---GCTTGCGTGTGAAGCGCAGCACGATCTTG 449179 ||||||| |||||||||||| ||||| || | ||| || |||||||| | |||| Sbjct 2095 CGGCTGCTGAACTTGTCCCCGATCTCGGGGCGCCT-CGTCTG--GCGCAGCAGCAGCTTG 2151 Query 449180 ATG 449182 ||| Sbjct 2152 ATG 2154 >seq39479 Length=2991 Score = 96.9 bits (106), Expect = 1e-14 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 349071 TGGCGTCGAGAATCTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGC 349130 |||| | || |||||||||| | ||||| ||| | || | |||| ||| || |||| Sbjct 1647 TGGCATTGATGATCTCCTTGATGCGGGGCACGCCTTGCGTGATGTTCATGGATGCCACGC 1588 Query 349131 CGGCAAAGTGGAAGGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGG 349186 | ||||||||||| |||| |||||||| ||||||| ||||||||||||| |||| Sbjct 1587 CCGCAAAGTGGAACGTCTTGAGGGTCATCTGCGTGGCCGGCTCGCCGATGCTCTGG 1532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079143191895768