Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_028482.1 Length=11877 Score E Sequences producing significant alignments: (Bits) Value seq185783 80.6 2e-11 >seq185783 Length=1760 Score = 80.6 bits (88), Expect = 2e-11 Identities = 106/147 (72%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 1917 TATATTCTCGAAAACACACCTTGCGTACAACAAGACACTATATTATGTCCCAGACGAGTC 1976 ||| ||||||||||| ||| || |||| | | | | ||||||||| |||| Sbjct 339 TATCTTCTCGAAAACGCACGAGGCATACATGAGGTCGTTTATTTATGTCCCGGACGCAGA 398 Query 1977 TGGAACATACTACTGGCATGGTCAAGATGGAGGAATTGAAGGCCTTAATCAAGACACATG 2036 || |||| ||| |||| ||| | |||||||| ||||| || || ||||||||||| Sbjct 399 TGAGGTTTACTCATGGGATGGGCAACAGGGAGGAATCGAAGGTCTAAACCAAGACACATG 458 Query 2037 GGTGGTGGTTTACATCAGCCAAATCAA 2063 |||| || ||||||| ||| ||||| Sbjct 459 GGTGTTGACTTACATCCACCAGATCAA 485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 37804019737584