Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_030204.1 Length=11163 Score E Sequences producing significant alignments: (Bits) Value seq185783 266 2e-67 >seq185783 Length=1760 Score = 266 bits (294), Expect = 2e-67 Identities = 683/1021 (67%), Gaps = 23/1021 (2%) Strand=Plus/Plus Query 1822 AAGAACGAGAACACAAGATTGCAGCCCGAGCTTTTGGATGTAAGACAACACAGGACAGAG 1881 ||||| ||||| || || | || || | || |||||||| | ||||| ||||||| Sbjct 32 AAGAAAAGGAACAAAAAATCGAGGCACGGGGATTCGGATGTAAATCGACACAAGACAGAG 91 Query 1882 CGAGGAGCATCATTCAGGAATTAAATGTTGCCCGCTTTCTAGACAAATACTCCGACGAGC 1941 | || || ||||| ||||| | ||||| || || || || | | ||||||||||| | Sbjct 92 CAAGAAGTATCATACAGGAGCTCAATGTGGCACGGTTCCTCAATGACTACTCCGACGAAC 151 Query 1942 ATGTCATGACACAAGGTGAGCTTGACGTAGCCAAAAAGTTACTAGGATTTCGCATGTTAG 2001 | || ||||||| |||||| | | | ||||| ||| |||||| |||||| | ||| Sbjct 152 ACGTAATGACACTAGGTGAAATCGCTCTTGCCAAGAAGCTACTAGCATTTCGGAGATTAC 211 Query 2002 GGGATGCGTATAAGGGTTACCGGATGATCATCATACAAGTAGATGCAAGTAGTTGGAATA 2061 |||| ||| ||| || |||||||||| | || ||||| || || ||||| | Sbjct 212 ACCATGCATATCGCGGTCACAAGATGATCATCGTCTCTGTGGATGCTAGCAGCTGGAACA 271 Query 2062 GCAGATTCCGGCATGAATCAGTAGCGCC---TATAGCAGCAGTCCTCGATAATGTTTACA 2118 ||||||| || | || || || || || | ||| || || ||| || || Sbjct 272 ACAGATTCAGGGCAGCCTCGGTGGCACCCGTAATGGAAGCTGTACTTGATGCTGCGTATG 331 Query 2119 ATGTTAAAATTTTCTCAAGGACACATGAAGCTTTCGAGATGTCTTTTGTTTACATGCCAG 2178 ||||| || ||||| | || || || || | | || ||| ||| |||| | || | Sbjct 332 ATGTTCCTATCTTCTCGAAAACGCACGAGGCATACATGAGGTCGTTTATTTATGTCCCGG 391 Query 2179 ATG-GGCTGACGACTTATTCATGGGACGGTCAATTAGGTGGCATTGAGGGTCTACAGCAG 2237 | | | ||| | ||| |||||||| || ||| || || || || |||||| | || Sbjct 392 ACGCAGATGA-GGTTTACTCATGGGATGGGCAACAGGGAGGAATCGAAGGTCTAAACCAA 450 Query 2238 TACACTTGGGTCTTTGTATATGTACATCATGTCAAAGTGTGTATGGAACAGCATCCTTAC 2297 |||| ||||| || || | || || |||||||||| ||||| | || |||||| Sbjct 451 GACACATGGGTGTTGACTTACATCCACCAGATCAAAGTGTGCATGGAGGATCACCCTTAC 510 Query 2298 CCCTTCTACATTCTATGTAAGGGGGATGATCTAAGAATAGCCGTCATGGTGCC-GCCTCA 2356 || | |||||| || || ||||| |||||||| | ||||| || |||||||| |||| Sbjct 511 CCATACTACATACTCTGCAAGGGAGATGATCTTCGGATAGCGGTAATGGTGCCACCCTC- 569 Query 2357 AGTG-ATTGA-AAACACATCGATTGACTCGTTAAAACAAAGGATATTAACAACATTGGCA 2414 || | ||| ||||| | | || | | || ||| | | || | | || Sbjct 570 --TGCACTGACTAACACTACACTAGATGCCCTCAAGCAACGTCTTCTAGAGTCCGTCTCA 627 Query 2415 G-ACGAGGCGTCTAAGATGGGGCATGTTCTCAAGGTGGAAGATTCTTATGCTTCGGAGTG 2473 | ||| || | || | || ||||| ||||||| |||| || ||||| || || || Sbjct 628 GCACGGGGTG-AAAAACTTGGACATGTAATCAAGGTAAAAGACTCATATGCCTCTGAATG 686 Query 2474 TTACTTTGCTTACTCTAAGAACACATTTGTCAATAACGTCGAACAACCACAGGCTTTTCG 2533 || ||||| ||| ||| | ||||||| | | || || || || ||| | || | Sbjct 687 CTATTTTGCCTACAGTAAAGATGCATTTGTGAGAGATGTGGAGCAGCCGCAGACATTCAG 746 Query 2534 AAAGATACAGAAATGCCACGGAGCAAATAATGC-TTTCCT-TAGTACCATTGATGATTAT 2591 ||||| ||||||||| |||| ||||| ||||| ||| || ||||| ||||| ||| Sbjct 747 GAAGATCCAGAAATGCTACGGTGCAAACAATGCGTTTACTACCGTACC--CGATGACTAT 804 Query 2592 ATAGGGTCAGCTTACTCA--AATGCTCACAGTGCAGCAAAAACTGCTCCTTCACCAATCC 2649 | || ||| | ||| ||||| |||||||| ||||||| | || ||||| | | Sbjct 805 GT--GGCCAGTGCATTCAGCAATGCGCACAGTGCCTCAAAAACATCACCATCACCGGTAC 862 Query 2650 CATGTTACTTGGTTGCACTCTTCTGGTC-TGTGTTGCATCTTGCTGAGCGTCCTGATTAC 2708 |||||||| || | |||| ||||| |||| | | || || || | | ||| Sbjct 863 CATGTTACGCCGTGGGTGTCTTTTGGTCGTGTGAT-CTGCTGGCAAGGCACGCAGTATAC 921 Query 2709 AAGGCCTTATCCGAGTCGGAGATGGCAGCCCTTCTCCAAGTTCCCAACTTGCTAGGCGGC 2768 | || ||||| |||||| | | || |||||||| || ||| | | || || Sbjct 922 TCCACATTGTCCGATGTGGAGATCACTGGGCTACTCCAAGTGCCAAACCTCTTGGGAGGA 981 Query 2769 TTACCCGTTGTGTTTTTGCACAACTTTTTCGTGCGGGCAGAGTCTGACTTGCTGCCTCCT 2828 || ||| | | | |||||||||| || | | |||||||| ||| | || |||||| Sbjct 982 TTTCCCATCATATACCTGCACAACTTCTTTACGAGAGCAGAGTCAGACCTACTTCCTCCT 1041 Query 2829 T 2829 | Sbjct 1042 T 1042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35524476616848