Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_031108.1 Length=39640 Score E Sequences producing significant alignments: (Bits) Value seq363 374 2e-99 seq125813 370 3e-98 seq108824 141 2e-29 seq35608 131 4e-26 >seq363 Length=1711 Score = 374 bits (414), Expect = 2e-99 Identities = 955/1430 (67%), Gaps = 61/1430 (4%) Strand=Plus/Minus Query 8821 GGCTCATCCCAATCGGGGGTGTAGGAGTTGGGGTCTGAAGCCGCCGGTCTCGAGCAGGCT 8880 |||||||| ||||| | |||||| | |||||||| || |||| || || | || Sbjct 1435 GGCTCATCGTAATCGAGAGTGTAGAACC---GGTCTGAAACCACCGGATTCAAGTAAGCA 1379 Query 8881 TCGGGCGATGTAGTTGGTCAGGTTGCGGAACCCGAGTGCGGAGCCGCGCAGGTGTTCGAG 8940 | |||||||| | ||||||||||| ||||||||||| || || || ||||| ||||| Sbjct 1378 CCTCGCGATGTAATGAGTCAGGTTGCGAAACCCGAGTGCCGATCCTCGAAGGTGCTCGAG 1319 Query 8941 CCGTCCGTTGAGCGCCTCGGTCGGCCCGTTGCTGGTGCCGGG--TCGTTCGAAGTAGGCG 8998 ||| || |||| || ||||| ||||| || || ||||| |||| |||| | || Sbjct 1318 CCGACCATTGATCGATTCGGTGGGCCCATTCGACGTTCCGGGCCTCGT--GAAGAACGCC 1261 Query 8999 AGCACGTCAGCGGCTCGCTTCTTCAGGGTCCGGCCCAGGGTGGTGAGCTCGGTGAGCACC 9058 | || || || || || |||||| || | |||| | | ||| || | | Sbjct 1260 AATACATCCGCTGCGCGTCGCTTCAGCGTTCTCCCCAACCGCCTCAACTCCGTCAATCCA 1201 Query 9059 TTGGGGACGCCGGCG--CTNNNNNNNNNNNNNAGCTTCTCCATGAGC-TCGCGGCCACGT 9115 || | || || | ||| || || |||| || | | | Sbjct 1200 GCAGGCAGTCCTGCCGACAAGACATCGATGACAGC--CTGCAAGAGCCTCTTGCCTTCAC 1143 Query 9116 TGCCGGTCCTCGTGGCGATAGGCGGCGATCATGCGCTGGTAGACACCCCAGGTCGCCTCG 9175 ||| |||||||| || || || || | ||| ||||||| ||||||| | ||| Sbjct 1142 TGC-GGTCCTCGGCCCGGTAAGCAGCCACGATGTCTTGGTAGAGCGCCCAGGTGACTTCG 1084 Query 9176 ACCTCGACGTGAGCGTC--ATCAACGAACAG-CGCGCGTAGCCTGTCGCTCTGCTTGTCG 9232 || ||| ||||| || |||| |||| || | ||| | || | ||| |||||| Sbjct 1083 ACTTCG--GTGAGGTTCGCATCAGCGAAGAGACTGGCG-ATCC----GTTCTTGTTGTCG 1031 Query 9233 ----GTGAGCAGGTCCGCGCCGGTGTGCAGCGTGCGCCGCGACTTGTAGAGCGGGTCGTC 9288 ||||||||||| | ||| ||||||||||| | || | | || | |||||| | Sbjct 1030 TCTCGTGAGCAGGTCTGTGCCCGTGTGCAGCGTCCTCCTTGCCCGATACAACGGGTCCTT 971 Query 9289 CCTGAACCCACGGTGCCC-GTGGATCGCGAGTTGGACCCGGCGCCGGCACCTG-TCGAGG 9346 | ||||| ||||| || | || | | ||||| ||||| || || | |||||| Sbjct 970 CGCTCGTCCACGATGCCCAGTTG-TCTCCTGCTGGACGCGGCGGCGA-ACGTCATCGAGG 913 Query 9347 GCGTCACCGGCCAGGCGCACGACGTGGAAGGGATCCATCACCGTGACCGCGTCCGGGATC 9406 || || || || || ||||||||||| || ||||| || || || || || | Sbjct 912 GCATCGCCAGCAAGCTTGACGACGTGGAACGGGTCCATGACTTCCACAGCATCGGGAAGT 853 Query 9407 TCCTCTGCAGCGGCGGTCTTGAACCCGGTGAAGCCGTCCATCGCGACCACCTCGACCGCG 9466 ||||| | || |||||||||||||||| ||| || |||||||| || || |||| | Sbjct 852 TCCTCAACGGCTGCGGTCTTGAACCCGGAGAAACCATCCATCGCAACGACTTCGATTCCA 793 Query 9467 TCACGGAAGGCGTCGTCGCGGTCGGCGAGCCAGGTCTTGAACGCCGCCTTCGACCGGCCC 9526 ||||| || | | | ||| |||| | ||| ||||| || ||||||||| || Sbjct 792 TCACGCCAGCCCTTGGGCCGGGCGGCCAACCATTGTTTGAAGACCTGCTTCGACCGTCCG 733 Query 9527 TCGACCATGTCCAGCAGCCTTGCTGGGCCGGCGCCATCGCGGACCGGGGTGAGGTCGATG 9586 ||||| || || || | ||||| ||| | || | || || ||||||||| |||||| Sbjct 732 GGCACCATATCGAGTAGGCGTGCTGTGCCCGTTCCTTGGCTGATCGGGGTGAGATCGATG 673 Query 9587 ATCACGGTGACGTACTTGTCGCCACGCCTGGTGTGGCGCCAGACGTGCTCATCGACGCCA 9646 || ||||||||||| ||||| || || | ||||||||||| |||||||| ||||| || Sbjct 672 ATGACGGTGACGTATTTGTCTCCCCGGCGAGTGTGGCGCCACACGTGCTCGTCGACACCG 613 Query 9647 ATGACCTTCACGCCCTCAAACCGCGTGGGGTCGTTGATCAGCAGCCGCTTGCCTTCAGCC 9706 || || |||| | || || || | || ||||||||||||||||| | ||||| | | Sbjct 612 ATCACAGACACGTCGTCGAATCGATTCGGATCGTTGATCAGCAGCCGTTGTCCTTCGGTC 553 Query 9707 AGGACCGCGTTGTTGGCGGTGTCCCACGCGACCCCGAGTCCCTCGGCGACACGGGCGACG 9766 ||||||||| ||| ||||| | ||| | ||| |||| || |||| |||||| Sbjct 552 AGGACCGCGGAGTTCGCGGTATGCCAGGACACCGCGAGCTTGTCAGCGATGACTGCGACG 493 Query 9767 GTGAGGTGTGCGACCACGATCCCTTCCAGCGCCCACCGCAGCCCGGTGCGCGAGAGCTTC 9826 ||| ||| ||| |||| | ||| ||||| || |||| || |||| ||| Sbjct 492 GTGTCGTGATCGATGACGAGGGCACGCAGTGCCCAATCGAGTCCGGCTCGAGAGATCTTT 433 Query 9827 GCGCGTGGCTCC-GCCGCGGCGCTGGTGTCTTGGCGCCACACGTGTCCGCAGTCGGCACA 9885 || || |||| ||||||| | ||||| |||||||||||||| ||||| ||| || Sbjct 432 GCTCG-GGCTGGTGCCGCGGTCGTAGTGTCCTGGCGCCACACGTGGCCGCATTCGATGCA 374 Query 9886 GCGGTAGCGGCGCACTACAACTTCCAGCACGGTCGGTCGCC---AGCCCAGCGGCTCGTG 9942 |||||| |||| | | ||| |||| | ||| ||| | |||||||| Sbjct 373 CTTGTAGCGACGCAGGCGGATAT---GCAGTGTCGTTGGCCTGTGGCCGAAGGGCTCGTG 317 Query 9943 GGCCAACCGCCGGATCACGGTGTCACGAGCAGCGCCTTCGCTGCCGCACCGTCGGCACCA 10002 |||| || || | |||||||| || |||| | || ||| || ||||||||||| Sbjct 316 TGCCAGTCGACGCACGACGGTGTCGCGGATGTCGCCGTGGCCGCCACATCGTCGGCACCA 257 Query 10003 CTGATC--TGGT-TCCACCACGCGGCACGCGAGGACCGCACGATCCG-GTTCAAGTCGTT 10058 | ||| |||| | | | ||||| |||| || | | | | | || ||| Sbjct 256 TTCATCGGTGGTGTTCGGC---CGGCATTTCAGGATGGCTTTGTGTGCGGTGATGT-GTT 201 Query 10059 GTCCGGTCACGCTCAGACCGAGGCCGTCGAGTCGAGCGAAGGCGGTCAGGTCAGGGCGGC 10118 | ||| | | |||| | ||| ||||||||| ||| | || |||||| |||| | Sbjct 200 GGCCGATGCAGGTCAGGTCAAGGGTGTCGAGTCGGCAGAATGTCGTGAGGTCA-GGCGTC 142 Query 10119 -CGAAGCCGGCCGGCGGGGTAGCGTCGGACACGTCGAGGTCTTTCGGATGGATGGCGTAG 10177 ||| |||| | | |||||||||||||||||||||| | || Sbjct 141 GAGAA------------AGTAGGCTTGTCCACGTCGAGGTCTTTCGGATGGGCAGTGTGA 94 Query 10178 GAACCTCCATCGTCGGGAGACCTCGACGTCTATCTGCGGACCGACGCGCC 10227 |||| |||||| |||| ||||||||||||||||| | | | |||| |||| Sbjct 93 GAACTTCCATCATCGGAAGACCTCGACGTCTATCCGGGTAGCGACTCGCC 44 >seq125813 Length=3276 Score = 370 bits (410), Expect = 3e-98 Identities = 638/908 (70%), Gaps = 19/908 (2%) Strand=Plus/Plus Query 9110 CCACGTTGCCGGTCCTCGTGGCGATAGGCGGCGATCATGCGCTGGTAGACACCCCAGGTC 9169 || |||||| |||| || || |||||| || ||| ||||| ||| ||||||| Sbjct 2266 CCTCGTTGC-GGTCGGCGGTTCGGTAGGCGTTGACTATGTCTTGGTAAACAGCCCAGGTG 2324 Query 9170 GCCTCGACCTCGACGTGAGCGTC--ATCAACGAACAGCGC-GCGTAGCCTGTCGCTCTGC 9226 | ||||| ||| |||| || ||| ||||||| | ||| | ||| || |||| Sbjct 2325 ACTTCGACTTCG--GTGAAACTCGAATCGGCGAACAGGCCTGCG-ATCCTCTCCTGCTGC 2381 Query 9227 TTGTCGGTGAGCAGGTCCGCGCCGGTGTGCAGCGTGCGCCGCGACTTG-TAGAGCGGGTC 9285 ||| |||||||| || ||||| |||||||| || | || || || | || | ||||| Sbjct 2382 TTGGTCGTGAGCAGATCAGCGCCTGTGTGCAGAGTCCTCCTCG-CTCGATACAAGGGGTC 2440 Query 9286 GTCCCTGAACCCACGGTGCCC-GTGGATCGCGAGTTGGACCCGGCGCCGGCACCTG-TCG 9343 | | ||||| || || || | || | | || | || || || || | ||| Sbjct 2441 TTTCGCTCGTCCACGATGGCCAGTTG-TCTCCTGCTGAATACGACGACGA-ACATCATCG 2498 Query 9344 AGGGCGTCACCGGCCAGGCGCACGACGTGGAAGGGATCCATCACCGTGACCGCGTCCGGG 9403 || || |||||||| || ||||| |||||||| ||||| || |||||| || || Sbjct 2499 AGAGCATCACCGGCGAGCTTGACGACATGGAAGGGGTCCATGACTTCGACCGCATCGGGC 2558 Query 9404 ATCTCCTCTGCAGCGGCGGTCTTGAACCCGGTGAAGCCGTCCATCGCGACCACCTCGACC 9463 | ||||| | | ||| || ||||| |||| ||| |||||||||||||| || |||| Sbjct 2559 AGTTCCTCGACCGAGGCTGTTTTGAAGCCGGAGAATCCGTCCATCGCGACGACGTCGATG 2618 Query 9464 GCGTCACGGAAGGCGTCGTCG--CGGTCGGCGAGCCAGGTCTTGAACGCCGCCTTCGACC 9521 | ||||| || | | ||| ||| | | ||| ||||||| || |||||| | Sbjct 2619 CCATCACGCCAGTCCT--TCGGACGGGCTTTCAACCACTGCTTGAACACCTGCTTCGAAC 2676 Query 9522 GGCCCTCGACCATGTCCAGCAGCCTTGCTGGGCCGGCGCCATCGCGGACCGGGGTGAGGT 9581 | || | |||||| ||||| | ||||||||| | | | || || ||||||||||| Sbjct 2677 GTCCGGGCATCATGTCGAGCAGACGTGCTGGGCCTGTTGCCTGGCTGATCGGGGTGAGGT 2736 Query 9582 CGATGATCACGGTGACGTACTTGTCGCCACGCCTGGTGTGGCGCCAGACGTGCTCATCGA 9641 ||||||| ||||||||||||||||||||||||| ||||| ||||| |||||||| |||| Sbjct 2737 CGATGATGACGGTGACGTACTTGTCGCCACGCCGAGTGTGCCGCCATACGTGCTCGTCGA 2796 Query 9642 CGCCAATGACCTTCACGCCCTCAAACCGCGTGGGGTCGTTGATCAGCAGCCGCTTGCCTT 9701 | |||||||| | || || || || ||||| ||||||||||||| ||||| | |||| Sbjct 2797 CACCAATGACGCTGACCCCGTCGAAACGCGTCGGGTCGTTGATCAACAGCCTGTGACCTT 2856 Query 9702 CAGCCAGGACCGCGTTGTTGGCGGTGTCCCACGCGACCCCGAGTCCCTCGGCGA-CACGG 9760 |||| |||| ||| ||| ||||||| ||| | || ||||| |||| ||||| Sbjct 2857 CAGCGAGGATTGCGGAGTTCGCGGTGTGCCAGGACACGGCGAGTTTGCGTGCGATCACGG 2916 Query 9761 GCGACGGTGAGGTGTGCGACCACGATCCCTTCCAGCGCCCACCGCAGCCCGGTGCGCGAG 9820 | |||||| ||| ||| |||| | ||||||||| || ||||| || ||| Sbjct 2917 AC-ACGGTGTCGTGGTCGATGACGAGGGCACGCAGCGCCCAGTCGAGGCCGGTTCGAGAG 2975 Query 9821 AGCTTCGCGCGTGGCTCCGCCGCGGCGCTGGTGTCTTGGCGCCACACGTGTCCGCAGTCG 9880 | |||||| ||||| |||||| || |||||||||| ||||| ||| | |||| ||| Sbjct 2976 ATCTTCGCTCGTGGGGGCGCCGCAGCAGTGGTGTCTTGACGCCATACGCGGTCGCACTCG 3035 Query 9881 GCACAGCGGTAGCGGCGCACTACAACTTCCAGCACGGTCGGTCGCCAGCCCAGCGGCTCG 9940 | || ||||||||| | || | ||| ||||||||| ||| | || ||| Sbjct 3036 ACGCATTTGTAGCGGCGGAGGCGAATATGAAGCGTGGTCGGTCGGTGGCCGAAGGGTTCG 3095 Query 9941 TGGGCCAACCGCCGGATCACGGTGTCACGAGCAGCGCCTTCGCTGCCGCACCGTCGGCAC 10000 ||||| | || |||| ||||| || ||| | || | || || |||||||||||| Sbjct 3096 TGGGCGAGACGGCGGACGACGGTATCCCGAACGATCCCGTGGCCACCACACCGTCGGCAC 3155 Query 10001 CACTGATC 10008 || | ||| Sbjct 3156 CAGTCATC 3163 >seq108824 Length=2319 Score = 141 bits (156), Expect = 2e-29 Identities = 322/473 (68%), Gaps = 16/473 (3%) Strand=Plus/Minus Query 9134 TAGGCGGCGATCATGCGCTGGTAGACACCCCAGGTCGCCTCGACCTCGACGTGAGCGTCA 9193 || ||||||| || | ||| ||| | || ||| |||||||| ||| || || || Sbjct 2008 TAAGCGGCGACCAGGGCCTGATAGGCGCCGTGGGTGACCTCGACCCCGATATGCGCATCC 1949 Query 9194 TCAACGAACAGCGCGCGTAGCCTGTCGCTCTGCTTGTCGGTGAGCAGGTCCGCGCCGGTG 9253 || |||||| ||| || | || ||||| ||| || ||||| || ||| ||| Sbjct 1948 TCGGCGAACACCGCCGCCAGGCGAGCGTTCTGCCAGTCCGTCCGCAGGCCCTCGCGGGTC 1889 Query 9254 TGCAGCGTGCGCCGCGACTTGTAGAGCGGGTCGTCCCTGAAC--CCACGGTGCCCGTGGA 9311 | || ||||| | ||||||||||||| || || | || || || || || Sbjct 1888 AGGAGGACTCGCCGGATCCCGTAGAGCGGGTCG--CCGGAGCGGCCCCGATGGCCATGTG 1831 Query 9312 TCGCGAGTTGGACCCGGCGCCGGCACCTGTCGAGGGCGTCACCG--GCCAGGCGCACGAC 9369 || | | |||| ||| ||| || || || | | || || ||| || ||| |||| || Sbjct 1830 TCTCCTGCTGGATCCGTTGCC-GCGCC-GTGGTGAGCTTCTCCGCCGCAAGGTGCACAAC 1773 Query 9370 GTGGAAGGGATCCATCACCGTGACCGCGTCCGGGATC---TCCTCTGCAGCGGCGGTCTT 9426 ||| || |||||||| ||||| || | ||| | | |||| || ||||| | Sbjct 1772 GTGAAACGGATCCATTACCGTCCTGGCCTGCGGTAACGATTCCT-TG--GCGGCCCGGTG 1716 Query 9427 GAACCCGGTGAAGCCGTCCATCGCGACCACCTCGACCGCGTCACGGAAGGCGTCG-TCGC 9485 | | |||| ||| ||||||||| ||| ||||| |||| ||| || || | ||| |||| Sbjct 1715 GTAGCCGGCGAACCCGTCCATCCCGATCACCTTGACCCGGTCCCGAAACG-ATCGCTCGC 1657 Query 9486 GGTCGGCGAGCCAGGTCTTGAACGCCGCCTTCGACCGGCCCTCGACCATGTCCAGCAGCC 9545 | || |||||||| ||||| ||| || | |||||||| |||||| ||||||||| Sbjct 1656 GTTCCTCGAGCCAGTCCTTGAGCGCAGCTGTGGACCGGCCTGGGACCATCGCCAGCAGCC 1597 Query 9546 TTGCTGGGCCGGCGCCATCGCGGACCGGGGTGAGGTCGATGATCACGGTGACG 9598 || || ||||| | || | || || || ||||| | |||||| |||||| Sbjct 1596 GGGCCGGACCGGCCGCGTCCAGTACGGGTGTCAGGTCCACGATCACCGTGACG 1544 >seq35608 Length=1089 Score = 131 bits (144), Expect = 4e-26 Identities = 176/240 (73%), Gaps = 4/240 (2%) Strand=Plus/Minus Query 24100 CGATCGCGTAGTCCGCTTCGGCCTGGGTGAACTTCTCTCCCGCGTCAGAGGTGAGCTGAT 24159 ||||||||||||| || | | |||||||| ||| || || |||||||||| Sbjct 1084 CGATCGCGTAGTCGGCCTGTGAGGTGGTGAACTGCTCGCCGTACTCGCTCGTGAGCTGAT 1025 Query 24160 CGTGGATCGCTGCGGGTGACATGCTCATGGTCG-CCTGGTACTGCTTGGCGGTCGCCAGA 24218 ||||||| || ||| |||||| ||| ||| ||||||| | || || |||| Sbjct 1024 CGTGGATGGCGTTGGGCGACATGGCCATA-TCGTCCTGGTAGGTCCGAGCCTTCTCCAGT 966 Query 24219 GCGTTCGCGTTCCAGTCGGCCTGCACGTTGTCGATGGCGTACTGCGCGGCATCAGCGGTG 24278 || || | |||||||||||||| |||||||||||||||||||| ||||| || || | | Sbjct 965 GCATTTTCATTCCAGTCGGCCTGGACGTTGTCGATGGCGTACTGAGCGGCCTCGGCCGAG 906 Query 24279 AACTTCTCCCCAGCGTCCGC-GGTGAGCTGGTCATAAACGCCCTGCTTCGACATGTGCAT 24337 || | ||| || | | ||| ||| ||||| || || | ||||||||| ||||||||| Sbjct 905 AAGTCCTCACC-GTATTCGCTGGTCAGCTGATCGTAGATGCCCTGCTTGCTCATGTGCAT 847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126418628779984