Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_032907.1 Length=13109 Score E Sequences producing significant alignments: (Bits) Value seq17807 96.9 3e-16 seq12203 96.9 3e-16 >seq17807 Length=6784 Score = 96.9 bits (106), Expect = 3e-16 Identities = 403/618 (65%), Gaps = 20/618 (3%) Strand=Plus/Minus Query 8191 ATCGGGCTGAGAGGAAAGGAAAGAGAAATCAAA-AGGATAGGTCGATTCTTCGCTCTTAT 8249 |||||||||| ||||||||| | ||||| || |||| || ||||||| | | || Sbjct 5416 ATCGGGCTGAAAGGAAAGGAGCGGGAAATTAAGGAGGAG-GGCAGATTCTTTTCATTGAT 5358 Query 8250 GTCATGGAAGCTGAGAGATTACTTCGTAATTACAGAATATTTAATTAAATTACATTT-CG 8308 ||||||||| || | | || ||||||| || | | || | || || ||| | Sbjct 5357 GTCATGGAACCTTCGCCAGTATTTCGTAACAACTGCACATCTGATCAAGGAGTTTTTATG 5298 Query 8309 TCCCTCTCTTCTCCGGATTAACTATGGCAGATGATCTAAACACAGTTGTTaaaaaaaTGC 8368 | || || |||||||| | || ||||| |||||||| | || |||| ||||| | | Sbjct 5297 TGCCACTGTTCTCCGGTCTCACAATGGCGGATGATCTCACCAAAGTTACGAAAAAGCTTC 5238 Query 8369 TCGATACATCTAATGGACAAGGGTTAGAC-GTTTACGACTATATCACAATGGCAAATCAT 8427 | |||| ||| || || | ||| | | | || || | || | || || || || Sbjct 5237 TAGATAACTCT-GTGAACCAAGGTCGGTCTGACTATGAGTCCATTTCCATCGCCAACCAC 5179 Query 8428 ATAGATTATGAGAAATGGAATAACCATCAAAGAGGAGAG-GCAAACAATCCTGTCTTCAC 8486 | |||||||| || |||||||| ||||| | | ||| |||| | || || |||| Sbjct 5178 GTGGATTATGAAAAGTGGAATAATCATCAGCGCGCTGAGAGCAATGACACC-GTATTCAA 5120 Query 8487 TGTCATGGGTCAGTTTCTAGGATATCCAAGCCTCATAACAAGAACACATGAGTTCTTTGA 8546 || ||||| ||||| |||| || | || | ||||||| |||| || | Sbjct 5119 AGTGATGGGACAGTTCCTAGACCTCCCTAATGTCTTTGTTCGAACACACAAGTTTTTCCA 5060 Query 8547 AAAAAGCTTGATCTATTACAACAACAGAACAGACCTAATGTATGTAAGAGATGGGGTTGT 8606 || || | |||||||| || |||||||| ||| ||| ||| || | Sbjct 5059 GAACAGTCTCATCTATTATGGGCCTCGACCAGACCTA----ATGGAAGTGATCGG--AGA 5006 Query 8607 TTTGAACAAAGATGATGACACG--CCT-GTCTGTTGGAATGGTCAGGCCGGAGGACTAGA 8663 || || | | | || || ||| ||||||||| | |||||| ||||| || || Sbjct 5005 TTCCCTCAGAAGTAAAGAAGCGTTCCTAGTCTGTTGGGAAGGTCAGCTGGGAGGGCTTGA 4946 Query 8664 GGGGCTGAGACAAAAAGGCTGGAGTATAGTCAACTTACTGGTAATCAAGAGAGAGGGTCG 8723 ||| || | || || || ||||| || || || | || || | |||||| || | Sbjct 4945 GGGCCTCCGTCAGAAGGGATGGAGCATCGTGAATCTCCTAGTGTTATTGAGAGA-GGCCA 4887 Query 8724 AGTCGAG-AACACAAGACTGAGCATTCTGGCCCAAGGAGATAATCAAGTCGTTTGC-ACT 8781 || | || ||||| ||| | |||||||| || || ||||| || | ||| ||| Sbjct 4886 AGACCAGAAACACTTTGGTGAAGACCCTGGCCCAGGGCGACAATCAGGTAATCTGCAACT 4827 Query 8782 CAATACAAACTCCAGAAA 8799 | || ||||||| |||| Sbjct 4826 C-GTATAAACTCCCGAAA 4810 >seq12203 Length=1511 Score = 96.9 bits (106), Expect = 3e-16 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 8383 GGACAAGGGTTAGACGTTTACGACTATATCACAATGGCAAATCATATAGATTATGAGAAA 8442 ||||||||| | ||| |||| | | | | || || || || ||||| |||||||| ||| Sbjct 1334 GGACAAGGGCAAAACGATTACCAATCTGTTACCATCGCCAACCATATTGATTATGAAAAA 1275 Query 8443 TGGAATAACCATCAAAGAGGAGAGGCAAACAATCCTGTCTTCACTGTCATGGGTCA 8498 ||||| ||||| ||||||||||| || |||| |||| |||||||| ||||| || Sbjct 1274 TGGAACAACCAACAAAGAGGAGACGCCGACAACTCTGTGTTCACTGTGATGGGGCA 1219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 41731482973376