Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_033034.1 Length=13000 Score E Sequences producing significant alignments: (Bits) Value seq17807 167 2e-37 seq70391 91.5 1e-14 seq99619 84.2 2e-12 >seq17807 Length=6784 Score = 167 bits (184), Expect = 2e-37 Identities = 607/934 (65%), Gaps = 31/934 (3%) Strand=Plus/Minus Query 7974 AATGATGTCGGATTATCCTGGGATGATTTGGTCATCGGACTGAAAGAAAAGGAGCGGGAA 8033 |||||| || ||||| | || || | | ||||| ||||||| ||||||||||||| Sbjct 5449 AATGATCCAGGTTTATCAAGAGACGACCTAATTATCGGGCTGAAAGGAAAGGAGCGGGAA 5390 Query 8034 TTGAAAACAGCAGGAC-GTTTCTTTTCATTAATGTCTTGGAAGCTGAGAGAATATTTTGT 8092 | || || ||| | | ||||||||||| ||||| ||||| || | | ||||| || Sbjct 5389 ATTAAGG-AGGAGGGCAGATTCTTTTCATTGATGTCATGGAACCTTCGCCAGTATTTCGT 5331 Query 8093 AATAACTGAATATCTCATAAAA-ACCTTTTATGTCCCTCTTTTTTATGGATTAACAATGG 8151 || ||||| | |||| || || | |||||||| || || || | || | ||||||| Sbjct 5330 AACAACTGCACATCTGATCAAGGAGTTTTTATGTGCCACTGTTCTCCGGTCTCACAATGG 5271 Query 8152 CTGATGACTTAGTTACTGTTATGAGAAAAATGCTCGAAACATCATCTGGACAAGGATTGG 8211 | ||||| | | |||| || ||| | || || | || | || || | | | || Sbjct 5270 CGGATGATCTCACCAAAGTTACGAAAAAGCTTCTAGATAACTC-TGTGAACCAAGGTCGG 5212 Query 8212 A-TAATTATGATGTGATCTATTTGGCCAATCACATCGATTATGAGAAATGGAATAACCAC 8270 | | ||||| || | | ||||| ||| | |||||||| || |||||||| || Sbjct 5211 TCTGACTATGAGTCCATTTCCATCGCCAACCACGTGGATTATGAAAAGTGGAATAATCAT 5152 Query 8271 CAACGACAAGCCTCGACTGGTCCTGTATTTAAGGTGATGGGACAATTCTTGGGTTACCCT 8330 || || | | || | ||||| || ||||||||||| ||| | | |||| Sbjct 5151 CAGCGCGCTGAGAGCAATGACACCGTATTCAAAGTGATGGGACAGTTCCTAGACCTCCCT 5092 Query 8331 AATTTAATTTACAGAACACACGAATTTTTTGAGAAAAGCCTGATTTATTATGGATATTAT 8390 ||| | || |||||||| | ||||| |||| || || || |||||||| | Sbjct 5091 AATGTCTTTGTTCGAACACACAAGTTTTTCCAGAACAGTCTCATCTATTATGGGCCTCGA 5032 Query 8391 CCAGAATTATTG--AGTGTT-GTAAATGGG----GAAGTTGCAAATAA---TTCTGATAA 8440 ||||| || || |||| | | | || ||||| ||| || ||| Sbjct 5031 CCAGACCTAATGGAAGTGATCGGAGATTCCCTCAGAAGT---AAAGAAGCGTTC------ 4981 Query 8441 ACGAGTGTGCTGGAATGGCCAGGCAGGAGGGCTGGAAGGGTTACGTCAGAAGGGATGGAG 8500 | ||| || ||| | || ||| |||||||| || || | ||||||||||||||||| Sbjct 4980 -CTAGTCTGTTGGGAAGGTCAGCTGGGAGGGCTTGAGGGCCTCCGTCAGAAGGGATGGAG 4922 Query 8501 CATTTTAAA-CTTATTG-GTAATTAGGAGAGAAGGAGCTCATCGAAATACACAAGTGAGA 8558 ||| | || || | | || ||| ||||| || || |||| || |||| Sbjct 4921 CATCGTGAATCTCCTAGTGTTATTGAGAGAGGCCAAGACCA--GAAACACTTTGGTGAAG 4864 Query 8559 TGTCTAGCTCAAGGAGACAATCAGGTTATCTGCACCTTATACAAACTTCAGAAATATCGA 8618 || || || || ||||||||||| ||||||| || || ||||| | ||||| | Sbjct 4863 ACCCTGGCCCAGGGCGACAATCAGGTAATCTGCAACTCGTATAAACTCCCGAAATCAACA 4804 Query 8619 ACACAAGAGGAACTCCAAGAAAACATCCAGCGGGTGGTTGATAATAATAATGTGATATTA 8678 || |||| || || ||| ||| | ||| | | || || | || | Sbjct 4803 ACCCAAGCTGAGCTGAAAGCTCGAATCGACGAAGTGATGCAGAACAACTCCATCATCATG 4744 Query 8679 AATAGAATTATCAAA-GGAACTGAGAGATTAGGATTGATTATAAATAGAGATGAAACAAT 8737 | || | || | || | || | | | ||| ||||||| ||| ||||||||| || Sbjct 4743 GA-AGCAGTAGCTCGCGGTATAGAAAAACTTGGACTGATTATCAATCAAGATGAAACGAT 4685 Query 8738 GCAAAGTGCTGATTACCTGAATTATGGCAAGATTCCCTTCTTTAGGGGGAATTTGAGAAA 8797 |||||| | || | || || ||||| ||||| | | || || ||| | | Sbjct 4684 GCAAAGCTCAGACTTTCTTTCATACGGCAAAGTTCCCGTTTACAGAGGTAATATCTTACC 4625 Query 8798 TCTTGAAACCAAACGATGGTCTAGAGTCACTTGCGTCACCAATGATCAAATTCCAACTTT 8857 ||| || ||||||| ||||| || ||||| || ||||| || || || || ||| |||| Sbjct 4624 TCTGGAGGCCAAACGCTGGTCAAGGGTCACGTGTGTCACAAACGAACAGATCCCATCTTT 4565 Query 8858 GGCAAACGTGATGTCTTCAGTTACAACAAATGCA 8891 ||| ||||||||||| | | | ||||||||| Sbjct 4564 GGCCAACGTGATGTCAACGACTGCTACAAATGCA 4531 >seq70391 Length=2338 Score = 91.5 bits (100), Expect = 1e-14 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 7966 AAGCAATTAATGATGTCGGATTATCCTGGGATGATTTGGTCATCGGACTGAAAGAAAAGG 8025 ||| ||| |||||| | ||| || | |||| | ||||||| || |||| || | Sbjct 1796 AAGAAATCAATGATTTTGGACTAAGTCGAAATGACCTCATCATCGGTCTCAAAGGCAAAG 1855 Query 8026 AGCGGGAATTGAAAACAGCAGGACGTTTCTTTTCATTAATGTCTTGGAAGCTGAGAGAAT 8085 | || ||| | || || |||| | |||||||| || ||||| |||||| |||| | | Sbjct 1856 AACGCGAAATTAAGTAAGAAGGAAGGTTCTTTTCCTTGATGTCATGGAAGATGAGGCAGT 1915 Query 8086 ATTTTGTAATAACTGAATATCTCATAAAAACCTTTTATGTCCCTCTTTTTTATGGATTAA 8145 | ||||| | ||||||| | || || ||| ||||||||||| || || || || || Sbjct 1916 ACTTTGTCACAACTGAACACCTGATCAAAGAATTTTATGTCCCACTGTTCTAGGGGTTGG 1975 Query 8146 CAATG 8150 ||||| Sbjct 1976 CAATG 1980 >seq99619 Length=1882 Score = 84.2 bits (92), Expect = 2e-12 Identities = 143/206 (69%), Gaps = 1/206 (0%) Strand=Plus/Plus Query 8693 AGGAACTGAGAGATTAGGATTGATTATAAATAGAGATGAAACAATGCAAAGTGCTGATTA 8752 |||||| ||| ||| ||| | || |||||| |||| ||||| ||| || |||||| Sbjct 198 AGGAACAAAGAAATTGGGACTAATCATAAATCGAGACGAAACTATGAGGAGCTCTGATTT 257 Query 8753 CCTGAATTATGGCAAGATTCCCTTCTTTAGGGGGAATTTGAGAAATCTTGAAACCAAACG 8812 |||| |||| | || | ||| | | | | || || | || ||| |||| | Sbjct 258 CCTGTCTTATAGGAACGTCCCCGTTTATCGCGGAAACATCTTGCCGCTGGAAGCCAAGAG 317 Query 8813 ATGGTCTAGAGTCACTTGCGTCACCAATGATCAAATTCCAACTTTGGCAAACGTGATGTC 8872 |||||| |||||||| || || ||||||||||| |||| | |||| || || ||||| Sbjct 318 ATGGTCAAGAGTCACCTGTGTGACCAATGATCAGGTTCCCTCACTGGCGAATGTCATGTC 377 Query 8873 TTCAGTTACAACAAATG-CATTAACA 8897 | || |||| |||| ||||| || Sbjct 378 CACTATTGCAACGAATGCCATTACCA 403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 41389351564736