Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_033070.1 Length=11145 Score E Sequences producing significant alignments: (Bits) Value seq66067 82.4 5e-12 seq12203 78.8 7e-11 >seq66067 Length=1491 Score = 82.4 bits (90), Expect = 5e-12 Identities = 115/159 (72%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 6208 CTGATCATTGGA-TTAAGAGCAAAAGAGCGAGAACTTAAAGAAGAAGGAAGGTTCTTTGC 6266 || ||||||||| ||||| ||||| || |||| ||||| | || ||||||||||| | Sbjct 1039 CTCATCATTGGACTTAAGGGCAAA-GAATGAGAGATTAAAAAGGAGGGAAGGTTCTTCTC 1097 Query 6267 ACTTATGTCTTGGGAAATCAGAGATTATTTTGTGATGACAGAGTATCTTATCAAAACACA 6326 | | ||||||||| |||| ||| | || || |||| || ||| || | |||| | Sbjct 1098 ATTGATGTCTTGGAAAATGAGACAATACTTCGTGACCACCGAGCATATGATCAGAGAGTT 1157 Query 6327 CTTTGTACCTCTGTTCAAAGGTCTGACAATGGCAGACGA 6365 || ||| || |||| || |||||||||| ||||| Sbjct 1158 CTATGTCCCATTGTTTTCAGAAATGACAATGGCTGACGA 1196 >seq12203 Length=1511 Score = 78.8 bits (86), Expect = 7e-11 Identities = 146/213 (69%), Gaps = 1/213 (0%) Strand=Plus/Minus Query 6331 GTACCTCTGTTCAAAGGTCTGACAATGGCAGACGATTTGACAACTGTAATCGGAAAAATT 6390 ||||| || || |||||| || ||||||||| | || || | || | ||| | Sbjct 1409 GTACCCCTATTTGGAGGTCTCACCATGGCAGACAACTTAACCAAAGTCACAAAAAAGCTG 1350 Query 6391 TTAGAGAATACAGAGGGACAAGGAGAAACAGGGTATGAGAATATCACGGTTTCAAACCAT 6450 || || ||| || ||||||||| ||| | || | | | || | | |||||| Sbjct 1349 TTGGACAATTCATTGGGACAAGGGCAAAACGATTACCAATCTGTTACCATCGCCAACCAT 1290 Query 6451 ATAGATTACGAGAAATGGAACAACCACCAAAGGAAAGAGGCCAATAATCCTGTGTTTGAT 6510 || ||||| || |||||||||||||| ||||| ||| ||| | || ||||||| | Sbjct 1289 ATTGATTATGAAAAATGGAACAACCAACAAAGAGGAGACGCCGACAACTCTGTGTTCACT 1230 Query 6511 GTAATGGGGAAATTCCTTGGCTACCCCAACCTT 6543 || |||||| || | ||||| | | |||| ||| Sbjct 1229 GTGATGGGGCAA-TACTTGGGTCCGCCAAACTT 1198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35467009143216