Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_033103.1 Length=13161 Score E Sequences producing significant alignments: (Bits) Value seq17807 147 2e-31 seq36615 78.8 8e-11 >seq17807 Length=6784 Score = 147 bits (162), Expect = 2e-31 Identities = 565/869 (65%), Gaps = 45/869 (5%) Strand=Plus/Minus Query 8146 ATCGGTCTCAAAGAAAAGGAGCGAGAAATAAAAAAGAAGGGACGGTTTTTCTCATTGATG 8205 ||||| || |||| ||||||||| ||||| || || |||| | || || ||||||||| Sbjct 5416 ATCGGGCTGAAAGGAAAGGAGCGGGAAATTAAGGAGGAGGGCAGATTCTTTTCATTGATG 5357 Query 8206 TCCTGGAGTCTTCGAGATTATTTTGTGGTGACTGAGTATTTAATAAAGAAACACTT-TGT 8264 || |||| ||||| | ||||| || |||| || | || ||| | || ||| Sbjct 5356 TCATGGAACCTTCGCCAGTATTTCGTAACAACTGCACATCTGATCAAGGAGTTTTTATGT 5297 Query 8265 TCCACTATTCTATGGTCTGACAATGGCCGATGATCTCACGACCGTGATGAGGAAGATGAT 8324 ||||| |||| ||||| |||||||| ||||||||||| | || | || ||| | | Sbjct 5296 GCCACTGTTCTCCGGTCTCACAATGGCGGATGATCTCACCAAAGTTACGAAAAAGCTTCT 5237 Query 8325 GGAGAATGCAAATGGA-CAGGGTCTGGATGATTATAGCTATATTTCTATTGCTAATCACA 8383 || || | || | || |||| | ||| ||| | ||||| || || || ||| Sbjct 5236 AGATAACTC-TGTGAACCAAGGTCGGTCTGACTATGAGTCCATTTCCATCGCCAACCACG 5178 Query 8384 TTGATTATGAGAAGTGGAATAATCACCAACG-GTTGGAATCAACCGGACCTGTGTTTCGT 8442 | |||||||| |||||||||||||| || || | || | ||| ||| || || Sbjct 5177 TGGATTATGAAAAGTGGAATAATCATCAGCGCGCTGAGAGCAATGACACC-GTATTCAAA 5119 Query 8443 GTAATGGGACAATTCTTAGGTTATCCAAATTTGATCTATAGGACACATGAGTTCTTTC-- 8500 || |||||||| ||| ||| || ||| | | | | ||||| |||| || | Sbjct 5118 GTGATGGGACAGTTCCTAGACCTCCCTAATGTCTTTGTTCGAACACACAAGTTTTTCCAG 5059 Query 8501 AACAATCTCTGATCTACCATGGAGGTCGAGGGGATTTAATGACAGTCAGAGATGGGAAAA 8560 |||| |||| ||||| |||| |||| || ||||| ||| ||| ||| | Sbjct 5058 AACAGTCTC--ATCTATTATGGGCCTCGACCAGACCTAATGGAAGT----GATCGGAGAT 5005 Query 8561 T---TGTGAATTCAGGATCCACACGT-GTGTGTTGGGAGGGACAAGCCGGTGGTCTAGAG 8616 | | ||| | | || | | | || |||||||| || || || || || ||| Sbjct 5004 TCCCTCAGAAGTAAAGAAGCGTTCCTAGTCTGTTGGGAAGGTCAGCTGGGAGGGCTTGAG 4945 Query 8617 GGGCTTAGACAAAAGGGATGGAGTATACTAAACCTGCTAGTAAT-----CAGACGCGAAG 8671 || || | || ||||||||||| || | || || ||||| | ||| || ||| Sbjct 4944 GGCCTCCGTCAGAAGGGATGGAGCATCGTGAATCTCCTAGTGTTATTGAGAGAGGCCAAG 4885 Query 8672 GTAGTCACC-GCAACACAAAGATAAAATGCCTGGCCCAGGGAGATAACCAGGTGATCTGC 8730 ||| | ||||| | | || |||||||||||| || || ||||| |||||| Sbjct 4884 ------ACCAGAAACACTTTGGTGAAGACCCTGGCCCAGGGCGACAATCAGGTAATCTGC 4831 Query 8731 -ACTCAGTATGAATTACAAAAGTCTCGATC---AGATCAG--GAAATGGAGGAAAATATA 8784 |||| |||| || | | || || | | || | || |||| | || | Sbjct 4830 AACTC-GTATAAACTCCCGAAATCAACAACCCAAGCTGAGCTGAAA-GCTCGA------A 4779 Query 8785 TTGA--AAGTTGTACAGAACAATCAGGTAATTTTAGCCAAAATTGAAGAGGGTACAAGGA 8842 | || |||| | |||||||| | || | | | | | |||| | | Sbjct 4778 TCGACGAAGTGATGCAGAACAACTCCATCATCATGGAAGCAGTAGCTCGCGGTATAGAAA 4719 Query 8843 AATTAGGGCTTATTATCAATAAAGATGAGACCATGCAAAGTGCAGACTATCTAAACTACG 8902 || | || || ||||||||| ||||||| || |||||||| |||||| ||| |||| Sbjct 4718 AACTTGGACTGATTATCAATCAAGATGAAACGATGCAAAGCTCAGACTTTCTTTCATACG 4659 Query 8903 GGAAAGTTCCGGTGGTTAGAGGCAATATAAGAGCGTTAGAGACTAAGCGGTGGGCAAGGG 8962 | |||||||| || ||||| ||||| | | | ||| | || || ||| |||||| Sbjct 4658 GCAAAGTTCCCGTTTACAGAGGTAATATCTTACCTCTGGAGGCCAAACGCTGGTCAAGGG 4599 Query 8963 TGACATGTGTGACAAATGATCAGATACCA 8991 | || ||||| ||||| || ||||| ||| Sbjct 4598 TCACGTGTGTCACAAACGAACAGATCCCA 4570 >seq36615 Length=1239 Score = 78.8 bits (86), Expect = 8e-11 Identities = 123/176 (70%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 8263 GTTCCACTATTCTATGGTCTGACAATGGCCGATGATCTCACGACCGTGATGAGGAAGATG 8322 ||||| ||||||| || |||||||||||||||||||||| | |||| | ||| | Sbjct 155 GTTCCCCTATTCTCAGGGTTGACAATGGCCGATGATCTCACAAAAGTGACCAAGAAACTC 214 Query 8323 ATGGAGAATGCAAATGGACAGGGTCTGGATGATTATAGCTATATTTCTATTGCTAATCAC 8382 | || || | | ||||| | || |||||| | | |||||| | || || || Sbjct 215 CTCGACAACTCGATCAACCAGGGCCAGGTTGATTACCGTTCCATTTCTCTAGCCAACCAT 274 Query 8383 ATTGATTATGAGAAGTGGAATAATCACCAACGGTTGGAATCAACCGGACCTGTGTT 8438 |||| || ||||| ||||| ||||| ||| | ||||| ||| | ||||| || Sbjct 275 GTTGACTACGAGAAATGGAACAATCATCAAAGAGTGGAAGCAAATGACCCTGTCTT 330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 41897489484592