Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_033703.1 Length=9314 Score E Sequences producing significant alignments: (Bits) Value seq36615 96.9 2e-16 seq99619 78.8 6e-11 >seq36615 Length=1239 Score = 96.9 bits (106), Expect = 2e-16 Identities = 418/648 (65%), Gaps = 15/648 (2%) Strand=Plus/Plus Query 4493 AAATGGAACAACACACAAAGAGGGAAAGCAAATAATCCAGTGTTCCGAGTTATGGGGAAA 4552 ||||||||||| ||||||| | |||||||| | || || ||| | || ||||| Sbjct 287 AAATGGAACAATCATCAAAGAGTGGAAGCAAATGACCCTGTCTTCACCATCATTGGGAAG 346 Query 4553 TTCTTGGGGCTCCCAAATATCATCTCAAGAACTCATGAGTTCTTCGAGAGGAG-CTGGAT 4611 | || || ||||||||| || | || | |||| | |||||| | || || | | Sbjct 347 GTTTTTGGTCTCCCAAATGTCTTTGCACGCACTCCCGCATTCTTCCAAGAAAGTCTTG-T 405 Query 4612 TTACTACAATGACAGATCGGATTTGATGGAACTAGTTGAAGGTGAAATCCGCAACCGAAC 4671 || || | | || | ||| |||||||| | || | || | | | ||||| | Sbjct 406 GTATTATGGTCCCCGACCAGATCTGATGGAAGTTGTGGGAGATTCAGTGTGCAACAAAGG 465 Query 4672 CACCCAAAGAGTTTGCTGGAATGGGCAACTGGGGGGACTTGAAGGGCTAAGACAAAAAGG 4731 | | | || || ||| | || || || || ||| | ||||| || ||||| || || Sbjct 466 CTCTTTTTG-GTGTGTTGGGAAGGACAGCTTGGTGGATTGGAAGGACTGAGACAGAAGGG 524 Query 4732 ATGGAGTGTGGTAAGCCTACTTGTAATTGAACGTGAAGGCAAAATACGAAACACAAAAAT 4791 |||||| | || | || ||||| | ||||| | ||| | || || ||| | Sbjct 525 TTGGAGTATCGTCAATCTCCTTGTTTTGCTTCGTGAGGCCAAGACCCGGAATACATTGGT 584 Query 4792 CAAAATACTCGCACAGGGGGACAATCAAGTTGTTTGCACCTCATATAAATTACCTGCG-G 4850 ||||| ||||||||| || ||||||||| | | || | ||| ||||||||||||| | Sbjct 585 CAAAACACTCGCACAAGGAGACAATCAACTCATATGTAACTCGTATAAATTACCTGAGAC 644 Query 4851 ATATGACCCATC-AAACTGTTACCGACGAGATCCCACATATTTGGGAGAATAACAGAGAA 4909 | ||||| || |||| | | | || ||| | | | ||||||| | | Sbjct 645 AAATGACGAGTCTGAACTCAAAGCCA-GA-ATCGTCGAGGTCATGACCAATAACAACGTA 702 Query 4910 ATAGTTAAAGCTATTGTCTCT---GGGACTACAAAATTGGGATTGGTGGTAAATGAGGAT 4966 || ||||| |||||| ||||| ||| ||||| | | ||||| | ||| Sbjct 703 ATCAAGAAAGC---GGTCTCTCAAGGGACAGAAAAGTTGGGGCCGATTATAAATCAAGAT 759 Query 4967 GAGACGCTGA-CAGCTAGTGATTATCTCAATTATGGGAAAGTTATACTTTACAGAGGAAA 5025 | || | | |||| ||||| | || || ||| | ||||| |||| | Sbjct 760 TAAACCATAAGGAGCT-CTGATTTCTTGTCCTACGGTAAAATCCCTGTTTACCGAGGGTA 818 Query 5026 TATGTTGCCACTGATAACAAAACGATGGTCAAGAGTTACGTGTGTGACTAATGATCAGAT 5085 ||| | |||||| | | || ||||||| |||| || | |||||| |||||||| || Sbjct 819 TATTCTACCACTGGAAGCCAAGAGATGGTCGCGAGTCACTTATGTGACCAATGATCAAAT 878 Query 5086 TCCAACCATTGGTAATATCATGTCAGCTGTTTCAACAAATGCCTTAAC 5133 ||| | | | ||| |||||||| | | ||||||||||| |||| Sbjct 879 TCCCTCACTGGCAAATGTCATGTCAACCATCGCAACAAATGCCATAAC 926 >seq99619 Length=1882 Score = 78.8 bits (86), Expect = 6e-11 Identities = 87/116 (75%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 5013 TTTACAGAGGAAATATGTTGCCACTGATAACAAAACGATGGTCAAGAGTTACGTGTGTGA 5072 |||| | ||||| || ||||| ||| | | || ||||||||||||| || ||||||| Sbjct 281 TTTATCGCGGAAACATCTTGCCGCTGGAAGCCAAGAGATGGTCAAGAGTCACCTGTGTGA 340 Query 5073 CTAATGATCAGATTCCAACCATTGGTAATATCATGTCAGCTGTTTCAACAAATGCC 5128 | ||||||||| |||| | | | ||| ||||||| || || |||| |||||| Sbjct 341 CCAATGATCAGGTTCCCTCACTGGCGAATGTCATGTCCACTATTGCAACGAATGCC 396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 29621290019872