Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq16016 176 9e-42 seq165536 141 2e-31 >seq16016 Length=1091 Score = 176 bits (194), Expect = 9e-42 Identities = 234/324 (72%), Gaps = 6/324 (2%) Strand=Plus/Plus Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCG 70 ||||| |||||||||| |||||| || || ||||| | || ||||| | | Sbjct 362 AGGGGAGTGAAATAGATCCTGAAATCGTATGCATACAAACAGTGGGAGCACCTTTGTGGT 421 Query 71 GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGG 130 ||||| |||| ||||||| |||||| | | ||| ||| | ||| || || |||| Sbjct 422 GTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTA-TATTCAGTGGCAAGCTTAACC 480 Query 131 GCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGC 190 | | || || || || ||||||||| ||||| ||||||| ||| | ||| Sbjct 481 GAATAGGGG-----AGGCGTAGCGAAAGCGAGTCTTAATAGGGCGATTAGTCGCTGGGAA 535 Query 191 TAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGG 250 ||||| ||||||| | |||||| ||| | |||||||||| | ||||||| || | ||| Sbjct 536 TAGACCCGAAACCAGGCGATCTATCCATGGCCAGGTTGAAGGCACGGTAACACGAGCTGG 595 Query 251 AGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGC 310 ||||||||||| |||||||||||||| |||||||| | || | || ||||||||| Sbjct 596 AGGACCGAACCCACTAACGTTGAAAAGTTAGCGGATGACCTGTGGATCGGAGTGAAAGGC 655 Query 311 CAATCAAACTGGGAAATAGCTCGT 334 |||||| || ||| |||||| || Sbjct 656 TAATCAAGCTCGGAGATAGCTGGT 679 >seq165536 Length=484117 Score = 141 bits (156), Expect = 2e-31 Identities = 240/342 (70%), Gaps = 13/342 (4%) Strand=Plus/Minus Query 1 TAGCCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGC- 59 || ||||| ||||| ||||||||| ||||| || || ||||||| |||||||| Sbjct 14214 TACCCCGACAAGGGGAGTGAAATAGTATCTGAAACCAAATGCTTACAAGCAGTCGGAGCA 14155 Query 60 --CG-AGTGATTCG----GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCG 112 || | | || | |||||||||| ||||||| |||||| | | ||| ||||| Sbjct 14154 AGCGTATTTATATGTCTTGTGACGGCGTACCTTTTGTATAATGGGTCAGCGACTTAGTT- 14096 Query 113 TCACCAGCGAGGTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGG 172 | | ||| || ||||| || ||| ||| || || ||||||||| || || ||| Sbjct 14095 TATCTAGCAAGCTTAAGCCGTT-AGGTG---TAGGCGTAGCGAAAGCGAGTCTGAATAGG 14040 Query 173 GCGACGAGTTGGTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGT 232 ||| |||| | | ||||| ||||||| |||||||| ||| | ||||||||| Sbjct 14039 GCGTTTAGTTAGATGAATTAGACCCGAAACCGGGTGATCTAGCCATGGCCAGGTTGAAAG 13980 Query 233 CGCGGTAACGCGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCG 292 || |||| || ||||||||||| | |||||||| | |||||| | Sbjct 13979 CGGAGTAAAATCCACTGAAGGACCGAACCCACTACTGTTGAAAAAGTAGGGGATGAGCTG 13920 Query 293 CGGGTAGGGGTGAAAGGCCAATCAAACTGGGAAATAGCTCGT 334 || |||||||||||||||||||||||| ||| |||||| || Sbjct 13919 TGGTTAGGGGTGAAAGGCCAATCAAACTCGGATATAGCTGGT 13878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 969205581824