Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18]
369,492 sequences; 1,765,382,190 total letters
Query= AAMG01000278.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
seq95709 116 7e-24
seq14242 113 8e-23
seq248604 96.9 6e-18
seq197698 93.3 8e-17
seq97131 89.7 9e-16
>seq95709
Length=1008
Score = 116 bits (128), Expect = 7e-24
Identities = 153/202 (76%), Gaps = 10/202 (5%)
Strand=Plus/Plus
Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC-CTTTGCTCGAAT-ACATTAGCATG 131
||||||||||||||||||||||| |||| |||||| || || |||| ||| | |||||
Sbjct 812 TTTACTTTGAAAAAATTAGAGTGCTCAACGCAGGCGATTCGCCTGAATAACAGT-GCATG 870
Query 132 GAATAATAGAATAGGA-CGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCG--TAATG 188
||||||||||| | || | | | |||| || ||||||||| | ||| | | |||||
Sbjct 871 GAATAATAGAACAAGATCCT--GTTTCTGTTCTGTTGGTTT-TTGGAATACAGGATAATG 927
Query 189 ATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTT 248
||||| ||||| || ||||| || ||||| | ||||||||||||||||||
Sbjct 928 ATTAAGAGGGACAGACGGGGCATTC-GTATTGCGGCGCTAGAGGTGAAATTCTTGGACCG 986
Query 249 ATTGAAGACTAACTACTGCGAA 270
||||| ||||||||||||
Sbjct 987 TCGCAAGACGAACTACTGCGAA 1008
>seq14242
Length=8668
Score = 113 bits (124), Expect = 8e-23
Identities = 184/260 (71%), Gaps = 20/260 (8%)
Strand=Plus/Plus
Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC---------GAATACATT 125
|||| ||||| ||||||||||| || |||||||| | ||| ||||| |
Sbjct 2995 TTACCTTGAACAAATTAGAGTGCTCTAAGCAGGC--TAGCTACACGGCCGAGAATAATCT 3052
Query 126 AGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTG--TTGGTTTCTAG---GACC- 179
|||||||||||| ||||| ||| | |||| || | | ||||||| || || |
Sbjct 3053 TGCATGGAATAATGGAATATGACCT-CGGTCTTAATATTCATTGGTTTGTAATCAGATCA 3111
Query 180 -GCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAAT 238
| ||||||||||| || |||| ||||| | |||||| | |||||||||||
Sbjct 3112 AGAGGTAATGATTAACAGAAGTAGTTGGGGGCATTAGTATTACGGCGCGAGAGGTGAAAT 3171
Query 239 TCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAAT 298
|| | || ||||||||||| |||||||| || ||| ||||| ||||||||||
Sbjct 3172 TCGTAGACCGTCGTAAGACTAACTAAAGCGAAAGCATTTGCCATGGATGCTTTCATTAAT 3231
Query 299 CAGTGAACGAAAGTTAGGGG 318
|| ||||||||||||| ||
Sbjct 3232 CA-AGAACGAAAGTTAGAGG 3250
>seq248604
Length=1952
Score = 96.9 bits (106), Expect = 6e-18
Identities = 123/166 (74%), Gaps = 4/166 (2%)
Strand=Plus/Minus
Query 155 TTCTATTTTGTTGGTTTCTAGGACCGCCG--TAATGATTAATAGGGATAGTCGGGGGTGT 212
|||| || ||||||||| | ||| | | |||| ||||| ||||| | |||||| |
Sbjct 390 TTCTGTTCTGTTGGTTTTT-GGAATACAGGATAATTATTAAGAGGGACAAACGGGGGCAT 332
Query 213 CAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAG 272
||||| || |||||||||| ||||||| ||||| ||||||||||||||
Sbjct 331 TCGTATTGCGGTGCTAGAGGTGAAAATCTTGGACCGTCGCAAGACGAACTACTGCGAAAG 272
Query 273 CGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318
| || ||||| ||||||||||| ||| ||||||||||||| ||
Sbjct 271 CATTTGCCAAGAATGTTTTCATTGGTCA-CGAACGAAAGTTAGAGG 227
>seq197698
Length=6134
Score = 93.3 bits (102), Expect = 8e-17
Identities = 138/193 (72%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 127 GCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGAC-CGCCGTA 185
|||||||||||| ||| | || | | |||| || ||||||| | | | | || ||
Sbjct 3977 GCATGGAATAATTGAACAAGAT-TCTGTTTCTGTTCTGTTGGTATTTGGAATACGGGATA 4035
Query 186 ATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGA 245
|||||||| ||||| || |||||| | ||||| | ||||||||||||||||||
Sbjct 4036 ATGATTAAGAGGGACAGACGGGGGCATTCGTATTACGCCGCTAGAGGTGAAATTCTTGGA 4095
Query 246 TTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAA 305
||||| |||| |||| ||||| || | ||| ||||||||||| |||| ||
Sbjct 4096 CCGTCGCAAGACGAACTGCTGCAAAAGCATTTGCAAAGAATGTTTTCATTGATCAAGAAA 4155
Query 306 CGAAAGTTAGGGG 318
|||||||| ||
Sbjct 4156 GAAAAGTTAGAGG 4168
>seq97131
Length=32657
Score = 89.7 bits (98), Expect = 9e-16
Identities = 122/167 (73%), Gaps = 4/167 (2%)
Strand=Plus/Plus
Query 155 TTCTATTTTG-TTGGTTTCTAGGACCGCCG--TAATGATTAATAGGGATAGTCGGGGGTG 211
|||| || || ||||||| | ||| | | |||||||||| || || || ||||||
Sbjct 12405 TTCTGTTCTGGTTGGTTTTTGGGAATACAGGATAATGATTAAGAGCGACAGACGGGGGCA 12464
Query 212 TCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAA 271
| ||||| | |||||||||||||| ||| | ||||| ||||||||||| |
Sbjct 12465 TTCGTATTGCGGCGCTAGAGGTGAAATTCTGGGACCGTCTCAAGACGAACTACTGCGACA 12524
Query 272 GCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318
|| || ||||| |||||||| || |||| || |||||||||| ||
Sbjct 12525 GCATTTTCCAAGAATGTTTTCTTTGATCA-AGACCGAAAGTTAGAGG 12570
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 911818409216
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |