Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq95709 116 7e-24 seq14242 113 8e-23 seq248604 96.9 6e-18 seq197698 93.3 8e-17 seq97131 89.7 9e-16 >seq95709 Length=1008 Score = 116 bits (128), Expect = 7e-24 Identities = 153/202 (76%), Gaps = 10/202 (5%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC-CTTTGCTCGAAT-ACATTAGCATG 131 ||||||||||||||||||||||| |||| |||||| || || |||| ||| | ||||| Sbjct 812 TTTACTTTGAAAAAATTAGAGTGCTCAACGCAGGCGATTCGCCTGAATAACAGT-GCATG 870 Query 132 GAATAATAGAATAGGA-CGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCG--TAATG 188 ||||||||||| | || | | | |||| || ||||||||| | ||| | | ||||| Sbjct 871 GAATAATAGAACAAGATCCT--GTTTCTGTTCTGTTGGTTT-TTGGAATACAGGATAATG 927 Query 189 ATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTT 248 ||||| ||||| || ||||| || ||||| | |||||||||||||||||| Sbjct 928 ATTAAGAGGGACAGACGGGGCATTC-GTATTGCGGCGCTAGAGGTGAAATTCTTGGACCG 986 Query 249 ATTGAAGACTAACTACTGCGAA 270 ||||| |||||||||||| Sbjct 987 TCGCAAGACGAACTACTGCGAA 1008 >seq14242 Length=8668 Score = 113 bits (124), Expect = 8e-23 Identities = 184/260 (71%), Gaps = 20/260 (8%) Strand=Plus/Plus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC---------GAATACATT 125 |||| ||||| ||||||||||| || |||||||| | ||| ||||| | Sbjct 2995 TTACCTTGAACAAATTAGAGTGCTCTAAGCAGGC--TAGCTACACGGCCGAGAATAATCT 3052 Query 126 AGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTG--TTGGTTTCTAG---GACC- 179 |||||||||||| ||||| ||| | |||| || | | ||||||| || || | Sbjct 3053 TGCATGGAATAATGGAATATGACCT-CGGTCTTAATATTCATTGGTTTGTAATCAGATCA 3111 Query 180 -GCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAAT 238 | ||||||||||| || |||| ||||| | |||||| | ||||||||||| Sbjct 3112 AGAGGTAATGATTAACAGAAGTAGTTGGGGGCATTAGTATTACGGCGCGAGAGGTGAAAT 3171 Query 239 TCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAAT 298 || | || ||||||||||| |||||||| || ||| ||||| |||||||||| Sbjct 3172 TCGTAGACCGTCGTAAGACTAACTAAAGCGAAAGCATTTGCCATGGATGCTTTCATTAAT 3231 Query 299 CAGTGAACGAAAGTTAGGGG 318 || ||||||||||||| || Sbjct 3232 CA-AGAACGAAAGTTAGAGG 3250 >seq248604 Length=1952 Score = 96.9 bits (106), Expect = 6e-18 Identities = 123/166 (74%), Gaps = 4/166 (2%) Strand=Plus/Minus Query 155 TTCTATTTTGTTGGTTTCTAGGACCGCCG--TAATGATTAATAGGGATAGTCGGGGGTGT 212 |||| || ||||||||| | ||| | | |||| ||||| ||||| | |||||| | Sbjct 390 TTCTGTTCTGTTGGTTTTT-GGAATACAGGATAATTATTAAGAGGGACAAACGGGGGCAT 332 Query 213 CAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAG 272 ||||| || |||||||||| ||||||| ||||| |||||||||||||| Sbjct 331 TCGTATTGCGGTGCTAGAGGTGAAAATCTTGGACCGTCGCAAGACGAACTACTGCGAAAG 272 Query 273 CGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 | || ||||| ||||||||||| ||| ||||||||||||| || Sbjct 271 CATTTGCCAAGAATGTTTTCATTGGTCA-CGAACGAAAGTTAGAGG 227 >seq197698 Length=6134 Score = 93.3 bits (102), Expect = 8e-17 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 127 GCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGAC-CGCCGTA 185 |||||||||||| ||| | || | | |||| || ||||||| | | | | || || Sbjct 3977 GCATGGAATAATTGAACAAGAT-TCTGTTTCTGTTCTGTTGGTATTTGGAATACGGGATA 4035 Query 186 ATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGA 245 |||||||| ||||| || |||||| | ||||| | |||||||||||||||||| Sbjct 4036 ATGATTAAGAGGGACAGACGGGGGCATTCGTATTACGCCGCTAGAGGTGAAATTCTTGGA 4095 Query 246 TTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAA 305 ||||| |||| |||| ||||| || | ||| ||||||||||| |||| || Sbjct 4096 CCGTCGCAAGACGAACTGCTGCAAAAGCATTTGCAAAGAATGTTTTCATTGATCAAGAAA 4155 Query 306 CGAAAGTTAGGGG 318 |||||||| || Sbjct 4156 GAAAAGTTAGAGG 4168 >seq97131 Length=32657 Score = 89.7 bits (98), Expect = 9e-16 Identities = 122/167 (73%), Gaps = 4/167 (2%) Strand=Plus/Plus Query 155 TTCTATTTTG-TTGGTTTCTAGGACCGCCG--TAATGATTAATAGGGATAGTCGGGGGTG 211 |||| || || ||||||| | ||| | | |||||||||| || || || |||||| Sbjct 12405 TTCTGTTCTGGTTGGTTTTTGGGAATACAGGATAATGATTAAGAGCGACAGACGGGGGCA 12464 Query 212 TCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAA 271 | ||||| | |||||||||||||| ||| | ||||| ||||||||||| | Sbjct 12465 TTCGTATTGCGGCGCTAGAGGTGAAATTCTGGGACCGTCTCAAGACGAACTACTGCGACA 12524 Query 272 GCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 || || ||||| |||||||| || |||| || |||||||||| || Sbjct 12525 GCATTTTCCAAGAATGTTTTCTTTGATCA-AGACCGAAAGTTAGAGG 12570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 911818409216