Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq360092 522 1e-145 seq14242 141 4e-31 seq362366 131 7e-28 seq113379 129 2e-27 seq88502 127 8e-27 seq254821 120 1e-24 seq143325 120 1e-24 seq61064 113 2e-22 seq360438 109 2e-21 seq363558 104 1e-19 seq180743 100 1e-18 seq67505 100 1e-18 seq260778 87.8 7e-15 seq180275 80.6 1e-12 seq142695 80.6 1e-12 seq136126 78.8 4e-12 >seq360092 Length=1112 Score = 522 bits (578), Expect = 1e-145 Identities = 413/489 (84%), Gaps = 10/489 (2%) Strand=Plus/Minus Query 14 GCCTAGCCG-TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATG 72 ||| |||| ||| |||||||||||||||||||||| |||||||||||| |||| ||||| Sbjct 503 GCCGAGCCTCTGTAAAGCTCCTTCGACGAGTCGAGTAGTTTGGGAATGCTGCTCAAAATG 444 Query 73 GGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGT 132 ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 443 GGAGGTAAACCCCTTCTAAAGCTAAATACTGGCCAGAGACCGATAGCGCACAAGTAGAGT 384 Query 133 GATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAG 192 |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| Sbjct 383 GATCGAAAGATGAAAAGCACTTTGAAAAGAGAGTTAAAAAGCACGTGAAATTGTTAAAAG 324 Query 193 GGAAGCGCTTGCAACCAGACTTGCCCGCAGTTGCTCAACCGGCCCCTCGGCCGGTGCACT 252 |||||||||||| ||||||||||| | | | ||||||| | | | | ||| ||||| Sbjct 323 GGAAGCGCTTGCGACCAGACTTGCGCCCGTCGGATCAACCGTCGCTTGCGGCGGCGCACT 264 Query 253 CTTCTGCGG--TCAGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGG 310 | | |||| ||||||||||||||| ||| ||| ||| |||||| ||||||||||| Sbjct 263 C--CGGCGGGCTCAGGCCAGCATCAGTTCGTCCGGGGGGAGAAAGGCGGCGGGAATGTGG 206 Query 311 CCCCCTTCGGGGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGC 370 | |||| || ||||||||||||| ||| ||| | | || |||||||||| |||| Sbjct 205 --CTCTTC--GGAGTGTTATAGCCCGCCGTGTAATAC-CCTCGGGTGGACTGAGGACCGC 151 Query 371 GCTCCGGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAG 430 || || ||||||||||||||||||| || |||| ||||||||| ||||||||||||| Sbjct 150 GCGTATGCAAGGATGCTGGCGTAATGGTCGTCAGCGACCCGTCTTGAAACACGGACCAAG 91 Query 431 GAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACG 490 ||||| | ||||||||||| ||||||||||||| ||||||||||||||||||||| Sbjct 90 GAGTCGTCCTAATATGCGAGTGTACGGGTGTCAAACCCCTGCGCGTAATGAAAGTGAACG 31 Query 491 GAGGTGGGA 499 |||||| || Sbjct 30 GAGGTGAGA 22 >seq14242 Length=8668 Score = 141 bits (156), Expect = 4e-31 Identities = 119/146 (82%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||| | |||||| | || ||||||||||| | ||||||||||||||| Sbjct 5341 GAGTCGTGTTGCTTGATAGTGCAGCACAAAGTGGGAGGTAAACTCCTTCTAAAGCTAAAT 5400 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 || | ||||||||||||| ||||||| |||| ||||| ||||||||||| || | Sbjct 5401 ATCACCACGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGTTGAAAAGCACTCTGAAT 5460 Query 160 AGAGAGTTAAAAAGCACGTGAAATTG 185 ||||||| |||||| |||||||| || Sbjct 5461 AGAGAGTCAAAAAGTACGTGAAACTG 5486 Score = 134 bits (148), Expect = 6e-29 Identities = 100/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 567 TGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTG 626 || |||||||||||||||||||||||||||| ||| ||||| ||| |||||| ||| || Sbjct 6063 TGTGACCCGAAAGATGGTGAACTATGCCTGATCAGGTTGAAGTCAGGGGAAACCCTGATG 6122 Query 627 GAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||| || ||| |||||| ||||||||||||| |||| | ||||| |||||||||| Sbjct 6123 GAGGACCGAAGCAGTTCTGACGTGCAAATCGATTGTCAGAATTGGGCATAGGGGCGA 6179 >seq362366 Length=1041 Score = 131 bits (144), Expect = 7e-28 Identities = 99/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624 ||||| |||||||||||||||||||||||| | ||| ||| ||||||||||||||||| Sbjct 677 GTTGGCACCCGAAAGATGGTGAACTATGCCCGGGCAGGATGAGGCCAGAGGAAACTCTGG 618 Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 |||||| || |||| ||||| ||||||||||||||||| | ||||||||||| Sbjct 617 TGGAGGTCCGAAGCGCTTCTGACGTGCAAATCGATCGTCCGACCCAGGTATAGGGGC 561 >seq113379 Length=1079 Score = 129 bits (142), Expect = 2e-27 Identities = 100/119 (84%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624 ||||| |||||||||||||||||||||||| | ||| || ||||||||||||||||| Sbjct 215 GTTGGCACCCGAAAGATGGTGAACTATGCCCGGGCAGGACGAGGCCAGAGGAAACTCTGG 156 Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||| || |||| ||||| ||||||||||||||||| | ||||||||||||| Sbjct 155 TGGAGGTCCGAAGCGCTTCTGACGTGCAAATCGATCGTCCGACCCAGGTATAGGGGCGA 97 >seq88502 Length=1324 Score = 127 bits (140), Expect = 8e-27 Identities = 114/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||| || |||||| |||| |||| |||||| | | ||||| ||||||| Sbjct 208 GAGTCGGGTTGCTTGAGAGTGCAGCCCTAATTGGGTGGTAAACTCCATCTAAGGCTAAAT 149 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | | |||||||||||| |||||||| |||| ||||| ||||||| |||||| | Sbjct 148 ACGTCCGAGAGACCGATAGTTCACAAGTACCGTGAGGGAAAGTTGAAAAGAACTTTGAAG 89 Query 160 AGAGAGTTAAAAAGCACGTGAAA 182 |||||||| || || |||||||| Sbjct 88 AGAGAGTTCAAGAGTACGTGAAA 66 >seq254821 Length=1148 Score = 120 bits (132), Expect = 1e-24 Identities = 98/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624 ||||| |||||||||||||||||||| ||| | ||| || ||||||||||||||||| Sbjct 1030 GTTGGCACCCGAAAGATGGTGAACTAAGCCCGGGCAGGACGAGGCCAGAGGAAACTCTGG 971 Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||| || |||| ||||| |||| |||||||||||| | ||||||||||||| Sbjct 970 TGGAGGTCCGAAGCGCTTCTGACGTGAAAATCGATCGTCCGACCCAGGTATAGGGGCGA 912 >seq143325 Length=6507 Score = 120 bits (132), Expect = 1e-24 Identities = 98/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624 ||||| |||||||||||||||||||||||| | ||| || |||||||||||||||| Sbjct 6134 GTTGGCACCCGAAAGATGGTGAACTATGCCCGGGCAGGACGAGGCCAGAGGAAACTCTGC 6193 Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||| || ||| ||||| ||||||||||||||||| | ||||||||||||| Sbjct 6194 TGGAGGTCCGAAGCCCTTCTGACGTGCAAATCGATCGTCCGACCGAGGTATAGGGGCGA 6252 >seq61064 Length=7892 Score = 113 bits (124), Expect = 2e-22 Identities = 83/97 (86%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624 |||| |||||||||||||||||||||||| | ||| || ||||||||||||||||| Sbjct 2385 GTTGACACCCGAAAGATGGTGAACTATGCCCGGGCAGGACGAGGCCAGAGGAAACTCTGG 2444 Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCG 661 ||||||| || |||| ||||| |||||||||||||| Sbjct 2445 TGGAGGCCCGAAGCGCTTCTGATGTGCAAATCGATCG 2481 >seq360438 Length=1420 Score = 109 bits (120), Expect = 2e-21 Identities = 101/128 (79%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613 |||||| | ||||| ||||||||||||||||| |||||| | | | || |||||| Sbjct 1104 AGAGCACATACGTTGGCACCCGAAAGATGGTGAATTATGCCCGGGCAAGACGAGGCCAGA 1163 Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673 ||||||||| ||||||| || |||| ||||| ||||||||||||||||| | ||| Sbjct 1164 GGAAACTCTCGTGGAGGTCCGAAGCGCTTCTGACGTGCAAATCGATCGTCCGACCCAGGT 1223 Query 674 ATAGGGGC 681 ||||| || Sbjct 1224 ATAGGTGC 1231 >seq363558 Length=1084 Score = 104 bits (114), Expect = 1e-19 Identities = 90/112 (80%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 71 TGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGA 130 |||| |||||| | | |||||||||||||| | |||||||||||| |||||||| Sbjct 1 TGGGTGGTAAACTCCATCTAAAGCTAAATACGTCCGAGAGACCGATAGTTCACAAGTACC 60 Query 131 GTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAA 182 |||| ||||| ||||||| |||||| | |||||||| || || |||||||| Sbjct 61 GTGAGGGAAAGTTGAAAAGAACTTTGAAGAGAGAGTTCAAGAGTACGTGAAA 112 >seq180743 Length=135097 Score = 100 bits (110), Expect = 1e-18 Identities = 81/98 (83%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624 |||| |||||||||||||| ||||||||| | ||| || ||||||||||||||||| Sbjct 101902 GTTGCCACCCGAAAGATGGTAAACTATGCCCGGGAAGGACGAGGCCAGAGGAAACTCTGG 101961 Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGT 662 ||||| || |||| ||| |||||| ||||||||||| Sbjct 101962 CGGAGGTCCGAAGCGCTTCCGGCGTGTAAATCGATCGT 101999 >seq67505 Length=17677 Score = 100 bits (110), Expect = 1e-18 Identities = 93/118 (79%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 566 TTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGT 625 |||| || |||| |||||||| ||||||| | ||| || |||||| ||||||||||| Sbjct 4203 TTGGCACACGAATGATGGTGAGCTATGCCCGGGCAGGACGAGGCCAGACGAAACTCTGGT 4144 Query 626 GGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||| || |||| || || |||||||||||||| || | ||||||||||||| Sbjct 4143 GGAGGTCCGAAGCGCTTGTGACGTGCAAATCGATCATCCCACCCAGGTATAGGGGCGA 4086 >seq260778 Length=16343 Score = 87.8 bits (96), Expect = 7e-15 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| ||| ||| || |||||| ||| |||| |||||| | | ||||| ||||||| Sbjct 15506 GAGTCGGGTTTCTTGAGAGTGCAGCCTTAATTGGGTGGTAAACTCCATCTAAGGCTAAAT 15447 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | | |||||||||||| || ||||| ||| || | ||||| |||||| | Sbjct 15446 ACGTCCGAGAGACCGATAGTTCAAAAGTACCTTGAAGAAACGTCTAAAAGAACTTTGAAG 15387 Query 160 AGAGAGTTAAAAAGCACGTGAAA 182 |||||||| || || |||| ||| Sbjct 15386 AGAGAGTTCAAGAGTACGTAAAA 15364 Score = 82.4 bits (90), Expect = 3e-13 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 571 ACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGG 630 ||| ||||||||| |||||||||| || |||| | || ||| ||| || ||| |||| Sbjct 14227 ACCTGAAAGATGGAGAACTATGCCCGAGTAGGACTAGGCTAGATAAAATTCCGGTTGAGG 14168 Query 631 CTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| ||| |||| ||||||||||||||||| ||||||||||||| Sbjct 14167 TTCGATGCGCGTCTGACGTGCAAATCGATCGTCCGTCCCAGGTATAGGGGCGA 14115 >seq180275 Length=1049 Score = 80.6 bits (88), Expect = 1e-12 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 610 CAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTT 669 ||||||||||||| ||||||| || |||| ||||| ||||||||||||||||| | Sbjct 1049 CAGAGGAAACTCTTGTGGAGGTCCGAAGCGCTTCTGACGTGCAAATCGATCGTCCGACCC 990 Query 670 GGGTATAGGGGCGA 683 ||||||||||||| Sbjct 989 AGGTATAGGGGCGA 976 >seq142695 Length=8751 Score = 80.6 bits (88), Expect = 1e-12 Identities = 90/119 (76%), Gaps = 1/119 (1%) Strand=Plus/Plus Query 566 TTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGT 625 |||| ||||||||||||| | |||||||| | ||| || || |||||| |||||| Sbjct 5005 TTGGCACCCGAAAGATGGCGGACTATGCCCGGGCAGGACGAGGCGAGAGGATGCTCTGGC 5064 Query 626 GGAGGCTCGCAGCGGTTCTGGCGTGCAAATC-GATCGTCAAATTTGGGTATAGGGGCGA 683 ||||| || |||| |||| |||||||||| |||||| | |||| |||||||| Sbjct 5065 GGAGGTCCGAAGCGCTTCTTACGTGCAAATCAGATCGTACGACCCAGGTACAGGGGCGA 5123 >seq136126 Length=9026 Score = 78.8 bits (86), Expect = 4e-12 Identities = 75/96 (78%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 87 TCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAA 146 ||||| |||||||| | ||||||||||| |||||||| |||| |||| |||| Sbjct 8169 TCTAAGGCTAAATACGTCCGAGAGACCGATACGTCACAAGTACCGTGAGGGAAACTTGAA 8228 Query 147 AAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAA 182 ||| |||||| | |||||||| || || |||||||| Sbjct 8229 AAGAACTTTGAAGAGAGAGTTCAAGAGTACGTGAAA 8264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2072074396600