Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq165536 347 3e-93 seq218279 190 5e-46 seq337855 114 3e-23 >seq165536 Length=484117 Score = 347 bits (384), Expect = 3e-93 Identities = 323/408 (79%), Gaps = 3/408 (1%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 ||| || |||| |||| |||||||||| |||||||||||||||||||| ||| |||| || Sbjct 146734 TACTTGCAGAAAAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGAGGGGGC 146675 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||| ||||||||||||||||||||| ||||| |||||||| ||||| | || Sbjct 146674 TAGCGTTGTTCGGAATTACTGGGCGTAAAGAGTGCGTAGGCGGTTTAGTAAGTTGGAAGT 146615 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182 |||| ||| ||||||||||| |||||||| || ||| | ||||||||| || Sbjct 146614 GAAAGCCCGGGGCTTAACCTCGGAATTGCTTTCAAAACTACTAATCTAGAGTGTAGTAGG 146555 Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242 || | ||||||||| |||||| ||||||| | ||||||| ||||||||||| ||| Sbjct 146554 GGATGATGGAATTCCTAGTGTAGAGGTGAAATTCTTAGATATTAGGAGGAACACCGGTGG 146495 Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302 ||||||| | | ||||| || ||||||||| ||||||||||||||||||||||||||| Sbjct 146494 CGAAGGCGGTCATCTGGGCTACAACTGACGCTAATGCACGAAAGCGTGGGGAGCAAACAG 146435 Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGG-GGATTTAC 361 |||||||||||||||||||||||||| |||||||| |||| | | || |||| | Sbjct 146434 GATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAGTGCTAGATATCGGAAGATTCTC 146375 Query 362 TTCCTTGGTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 || | ||| || ||||||||| | ||| |||||||| || ||| Sbjct 146374 TT--TCGGTTTCGCAGCTAACGCATTAAGCACTCCGCCTGGAGAGTAC 146329 >seq218279 Length=1762 Score = 190 bits (210), Expect = 5e-46 Identities = 128/143 (90%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 12 AATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAA 71 || |||||||||||||||| |||||||||||||||||||||| |||||||| |||||||| Sbjct 1620 AAGAAGCACCGGCTAACTATGTGCCAGCAGCCGCGGTAATACATAGGGTGCGAGCGTTAA 1679 Query 72 TCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCCC 131 ||||||||||||||||||||| ||||||||||||| | |||| ||| |||||||||||| Sbjct 1680 TCGGAATTACTGGGCGTAAAGGGTGCGCAGGCGGTCTTATAAGTCAGATGTGAAATCCCC 1739 Query 132 GGGCTTAACCTGGGAATTGCATT 154 | ||| ||| |||||| ||| || Sbjct 1740 GAGCTCAACTTGGGAACTGCGTT 1762 >seq337855 Length=263513 Score = 114 bits (126), Expect = 3e-23 Identities = 66/68 (97%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 242581 TACCGGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 242640 Query 63 AAGCGTTA 70 ||||||| Sbjct 242641 GAGCGTTA 242648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1284835031168