Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18]
369,492 sequences; 1,765,382,190 total letters
Query= AAMG01000383.1
Length=435
Score E
Sequences producing significant alignments: (Bits) Value
seq165536 347 3e-93
seq218279 190 5e-46
seq337855 114 3e-23
>seq165536
Length=484117
Score = 347 bits (384), Expect = 3e-93
Identities = 323/408 (79%), Gaps = 3/408 (1%)
Strand=Plus/Minus
Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62
||| || |||| |||| |||||||||| |||||||||||||||||||| ||| |||| ||
Sbjct 146734 TACTTGCAGAAAAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGAGGGGGC 146675
Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122
|||||| ||||||||||||||||||||| ||||| |||||||| ||||| | ||
Sbjct 146674 TAGCGTTGTTCGGAATTACTGGGCGTAAAGAGTGCGTAGGCGGTTTAGTAAGTTGGAAGT 146615
Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182
|||| ||| ||||||||||| |||||||| || ||| | ||||||||| ||
Sbjct 146614 GAAAGCCCGGGGCTTAACCTCGGAATTGCTTTCAAAACTACTAATCTAGAGTGTAGTAGG 146555
Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242
|| | ||||||||| |||||| ||||||| | ||||||| ||||||||||| |||
Sbjct 146554 GGATGATGGAATTCCTAGTGTAGAGGTGAAATTCTTAGATATTAGGAGGAACACCGGTGG 146495
Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302
||||||| | | ||||| || ||||||||| |||||||||||||||||||||||||||
Sbjct 146494 CGAAGGCGGTCATCTGGGCTACAACTGACGCTAATGCACGAAAGCGTGGGGAGCAAACAG 146435
Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGG-GGATTTAC 361
|||||||||||||||||||||||||| |||||||| |||| | | || |||| |
Sbjct 146434 GATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAGTGCTAGATATCGGAAGATTCTC 146375
Query 362 TTCCTTGGTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409
|| | ||| || ||||||||| | ||| |||||||| || |||
Sbjct 146374 TT--TCGGTTTCGCAGCTAACGCATTAAGCACTCCGCCTGGAGAGTAC 146329
>seq218279
Length=1762
Score = 190 bits (210), Expect = 5e-46
Identities = 128/143 (90%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 12 AATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAA 71
|| |||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||
Sbjct 1620 AAGAAGCACCGGCTAACTATGTGCCAGCAGCCGCGGTAATACATAGGGTGCGAGCGTTAA 1679
Query 72 TCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCCC 131
||||||||||||||||||||| ||||||||||||| | |||| ||| ||||||||||||
Sbjct 1680 TCGGAATTACTGGGCGTAAAGGGTGCGCAGGCGGTCTTATAAGTCAGATGTGAAATCCCC 1739
Query 132 GGGCTTAACCTGGGAATTGCATT 154
| ||| ||| |||||| ||| ||
Sbjct 1740 GAGCTCAACTTGGGAACTGCGTT 1762
>seq337855
Length=263513
Score = 114 bits (126), Expect = 3e-23
Identities = 66/68 (97%), Gaps = 0/68 (0%)
Strand=Plus/Plus
Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 242581 TACCGGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 242640
Query 63 AAGCGTTA 70
|||||||
Sbjct 242641 GAGCGTTA 242648
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1284835031168
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |