Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq165536 129 8e-28 >seq165536 Length=484117 Score = 129 bits (142), Expect = 8e-28 Identities = 178/245 (73%), Gaps = 17/245 (7%) Strand=Plus/Plus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 |||||| ||| ||||||||||||| || ||||| ||| || | | ||| ||| | ||| Sbjct 12952 CTTCCAGCACTGGGCAGGCGTCAGACCCTATACGTCGTCT-ATTGACTTTGCAGAGCCCT 13010 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGT 126 ||||||||| |||||||||||| ||| ||| | ||| |||| || || | Sbjct 13011 GTGTTTTTAATAAACAGTCGCTACCCCCTAGCTTGTGC------CACCTGCACA-----T 13059 Query 127 CGTTCACCAG---CAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTC 183 ||| ||| ||| | || | |||| |||||||||| | || |||||| | ||| Sbjct 13060 GGTTGCCCATATACAG-GTCATCT-TTCTTCCGAAGTTACAGATGCAATTTGCCTAGTTC 13117 Query 184 CTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTA 243 ||| | || |||| | | | |||||| |||| ||||||||| |||||||||||||||| Sbjct 13118 CTTCAGCATCGTTCTCTCAAGCGCCTTGGTATACTCTACCTGTCCACCTGTGTCGGTTTT 13177 Query 244 CGGTA 248 |||| Sbjct 13178 GGGTA 13182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 691914427316