Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq165536 286 9e-75 >seq165536 Length=484117 Score = 286 bits (316), Expect = 9e-75 Identities = 307/407 (75%), Gaps = 23/407 (6%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||| | || ||||||||| ||||||| ||||||||| | | |||||| Sbjct 12774 GCATCTTCACGGAGAATTCAATTTCGCTGAGTCGATACTGGAGACAGTGGGGAAATCGTT 12833 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | Sbjct 12834 ACGCCATTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTCA 12893 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACCCCATC 192 | ||||||||||||||| || ||| |||| || ||||| |||| ||||| | Sbjct 12894 TAGTTACGGCCGCCGTTCACTGGGACTTCAATTCAGAGC-TCGC--------ACCCCTCC 12944 Query 193 AATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAG 252 |||| ||||| |||| |||||||||||| |||||||||||| || | | ||||||| Sbjct 12945 TTTTAATCTTCCAGCACTGGGCAGGCGTCAGACCCTATACGTCGTCTATTGACTTTGCAG 13004 Query 253 AGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGCTTA 312 || ||||||||||||||||||||||| | ||| | | | | ||| ||| | || Sbjct 13005 AGCCCTGTGTTTTTAATAAACAGTCGCTACCCCCTAGCTTGTGCCACCTGCACATGGTT- 13063 Query 313 CGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTGC 372 | || | || || | |||| |||||||||| | | ||||| Sbjct 13064 --------GCCCAT-----ATACAGGTCATCTTTCTTCCGAAGTTACAGATGCAATTTGC 13110 Query 373 CTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACC 419 ||||||||||| | |||||||||||||||||||||| ||||||| Sbjct 13111 CTAGTTCCTTCAGCATCGTTCTCTCAAGCGCCTTGGTATACTCTACC 13157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1256141444864