Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq165536 432 1e-118 seq347912 89.7 2e-15 >seq165536 Length=484117 Score = 432 bits (478), Expect = 1e-118 Identities = 403/502 (80%), Gaps = 9/502 (2%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| || |||||||||||||||||||||| | ||||||||||||||||||| Sbjct 146331 TACGGTCGCAAGATTAAAACTCAAAGGAATTGACGGGGGCTCGCACAAGCGGTGGAGCAT 146272 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 | |||||||||||| | ||||||| ||||||||||| |||||||| | | | | Sbjct 146271 GCGGTTTAATTCGATGTTACGCGAAAAACCTTACCAACCCTTGACATGGTG-GTCGCGGA 146213 Query 121 TAG-AGATAGAGGTTTCCCCT--TCGGG-GGACAGAGTGACAGGTGATGCATGGTTGTCG 176 | | ||| | | |||| | |||| |||| | ||||||| |||| || ||||| Sbjct 146212 TTGCAGAGATACTTTTCTTCAGCTCGGCTGGACC-ACACACAGGTGTTGCACGGCTGTCG 146154 Query 177 TCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAG 236 ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| Sbjct 146153 TCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCATTCTTAT 146094 Query 237 TTGCCATCAT-TAA-GTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGT 294 |||||| | ||| | ||| ||| |||| ||||| ||||| || || ||||||||| Sbjct 146093 TTGCCAGCGGGTAATGCCGGGAACTATAAGAAAACTGCTGGTGATAAGCCAGAGGAAGGT 146034 Query 295 GGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGA 354 |||||||||||||| |||||||| |||||| | ||||||||||| ||||||||||||| Sbjct 146033 GGGGACGACGTCAAGTCATCATGGCCCTTACGGGTTGGGCTACACGCGTGCTACAATGGT 145974 Query 355 CAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTC 414 |||| |||| ||| | || |||| || |||||||||| |||| ||||||||| Sbjct 145973 GTTTACAGAGGGAAGCAAGACGGCGACGTGGAGCAAATCCC-TAAAAGACATCTCAGTTC 145915 Query 415 GGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCA 474 ||||||| |||||||||||| |||||| |||||||||||||||||| |||||||| Sbjct 145914 GGATTGTTCTCTGCAACTCGAGAGCATGAAGTTGGAATCGCTAGTAATCGCGGATCAGCA 145855 Query 475 TGCTACGGTGAATACGTTCCCG 496 ||| |||||||||||||| || Sbjct 145854 TGCCGCGGTGAATACGTTCTCG 145833 >seq347912 Length=48280 Score = 89.7 bits (98), Expect = 2e-15 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 291 AGGTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAA 350 ||||||||| ||||||| ||||||| | |||||| | ||||||||||||||||||||| Sbjct 40099 AGGTGGGGATGACGTCAGATCATCACGGCCCTTACGTCCTGGGCTACACACGTGCTACAA 40158 Query 351 TGGACAATACAAAGGGCAGCGAAACCGCGAGG 382 ||| | |||| | || || || |||||||| Sbjct 40159 TGGCAAGGACAATGAGCTGCCAACCCGCGAGG 40190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1498442840320