Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18]
369,492 sequences; 1,765,382,190 total letters
Query= AAMG01001178.1
Length=367
Score E
Sequences producing significant alignments: (Bits) Value
seq165536 286 7e-75
seq218279 259 1e-66
seq337855 98.7 2e-18
>seq165536
Length=484117
Score = 286 bits (316), Expect = 7e-75
Identities = 265/335 (79%), Gaps = 16/335 (5%)
Strand=Plus/Plus
Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60
|||||||| || ||| ||||| | ||| ||| ||| |||| |||||||||||||||||||
Sbjct 146762 CTTTACAACCCTAAGGCCTTCAT-CACTCACTCGGTATTG-CTGGATCAGGCTTTCGCCC 146819
Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 146820 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAG 146879
Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180
|||| ||||||||||||||||||||| ||| |||||||| ||||||||||| ||||||||
Sbjct 146880 TGTGGCTGATCATCCTCTCAGACCAGCTACAGATCGTCGGCTTGGTGAGCCGTTACCTCA 146939
Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240
||||| | |||||| ||| |||||||| |||| | || |||
Sbjct 146940 CCAACGACCTAATCTGACGCGGGCTCATCCATCAGCGATA------AA--------TCTT 146985
Query 241 TCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAG 300
||| |||||| ||| |||||||||| | |||| || ||||| || ||| |
Sbjct 146986 TCTTCCGTAGAGAATATACGGTATTAGCTTTTATTTCTAAAAGTTATTCCGTACTGATGG 147045
Query 301 GCAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335
| ||||||| | | ||||||||||||| ||| ||
Sbjct 147046 GTAGATTCCCACGTGTTACTCACCCGTCTGCCACT 147080
>seq218279
Length=1762
Score = 259 bits (286), Expect = 1e-66
Identities = 177/197 (90%), Gaps = 2/197 (1%)
Strand=Plus/Minus
Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60
|||||||| |||||| ||||||| ||| ||||||| || |||||||||||| |||| |||
Sbjct 1558 CTTTACAACCCGAAGGCCTTCTT-CACTCACGCGGAAT-GGCTGGATCAGGGTTTCCCCC 1501
Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 ATTGTCCAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 1441
Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180
|||| |||||| |||||||||||||| ||| |||||||| |||||| ||| ||||| ||
Sbjct 1440 TGTGGCTGATCGTCCTCTCAGACCAGCTACTGATCGTCGGCTTGGTAGGCCTTTACCCCA 1381
Query 181 CCAACTAGCTAATCCGA 197
||||||| |||||| ||
Sbjct 1380 CCAACTACCTAATCAGA 1364
>seq337855
Length=263513
Score = 98.7 bits (108), Expect = 2e-18
Identities = 70/78 (90%), Gaps = 2/78 (3%)
Strand=Plus/Minus
Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60
|||||||| |||||| ||||||| |||||||||||||||| |||||||||| || | |||
Sbjct 242528 CTTTACAACCCGAAGGCCTTCTT-CACACACGCGGCATTG-CTGGATCAGGGTTGCCCCC 242471
Query 61 ATTGTCCAATATTCCCCA 78
||||||||| ||||||||
Sbjct 242470 ATTGTCCAAAATTCCCCA 242453
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1068039045760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |