Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq165536 286 7e-75 seq218279 259 1e-66 seq337855 98.7 2e-18 >seq165536 Length=484117 Score = 286 bits (316), Expect = 7e-75 Identities = 265/335 (79%), Gaps = 16/335 (5%) Strand=Plus/Plus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||| || ||| ||||| | ||| ||| ||| |||| ||||||||||||||||||| Sbjct 146762 CTTTACAACCCTAAGGCCTTCAT-CACTCACTCGGTATTG-CTGGATCAGGCTTTCGCCC 146819 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| Sbjct 146820 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAG 146879 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| ||||||||||||||||||||| ||| |||||||| ||||||||||| |||||||| Sbjct 146880 TGTGGCTGATCATCCTCTCAGACCAGCTACAGATCGTCGGCTTGGTGAGCCGTTACCTCA 146939 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240 ||||| | |||||| ||| |||||||| |||| | || ||| Sbjct 146940 CCAACGACCTAATCTGACGCGGGCTCATCCATCAGCGATA------AA--------TCTT 146985 Query 241 TCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAG 300 ||| |||||| ||| |||||||||| | |||| || ||||| || ||| | Sbjct 146986 TCTTCCGTAGAGAATATACGGTATTAGCTTTTATTTCTAAAAGTTATTCCGTACTGATGG 147045 Query 301 GCAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335 | ||||||| | | ||||||||||||| ||| || Sbjct 147046 GTAGATTCCCACGTGTTACTCACCCGTCTGCCACT 147080 >seq218279 Length=1762 Score = 259 bits (286), Expect = 1e-66 Identities = 177/197 (90%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||| |||||| ||||||| ||| ||||||| || |||||||||||| |||| ||| Sbjct 1558 CTTTACAACCCGAAGGCCTTCTT-CACTCACGCGGAAT-GGCTGGATCAGGGTTTCCCCC 1501 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1500 ATTGTCCAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 1441 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 |||| |||||| |||||||||||||| ||| |||||||| |||||| ||| ||||| || Sbjct 1440 TGTGGCTGATCGTCCTCTCAGACCAGCTACTGATCGTCGGCTTGGTAGGCCTTTACCCCA 1381 Query 181 CCAACTAGCTAATCCGA 197 ||||||| |||||| || Sbjct 1380 CCAACTACCTAATCAGA 1364 >seq337855 Length=263513 Score = 98.7 bits (108), Expect = 2e-18 Identities = 70/78 (90%), Gaps = 2/78 (3%) Strand=Plus/Minus Query 1 CTTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 |||||||| |||||| ||||||| |||||||||||||||| |||||||||| || | ||| Sbjct 242528 CTTTACAACCCGAAGGCCTTCTT-CACACACGCGGCATTG-CTGGATCAGGGTTGCCCCC 242471 Query 61 ATTGTCCAATATTCCCCA 78 ||||||||| |||||||| Sbjct 242470 ATTGTCCAAAATTCCCCA 242453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068039045760