Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18]
369,492 sequences; 1,765,382,190 total letters
Query= AAMG01001213.1
Length=600
Score E
Sequences producing significant alignments: (Bits) Value
seq165536 425 2e-116
seq16016 340 6e-91
>seq165536
Length=484117
Score = 425 bits (470), Expect = 2e-116
Identities = 467/605 (77%), Gaps = 16/605 (3%)
Strand=Plus/Plus
Query 1 TCGACTACGGAGCTTAATCCCCCGCAGTCTCACAGCCGCGCTCTCACTTCCCGGCATTCG 60
||||||| ||| |||| | ||| ||||| | || ||| | ||| || ||||||
Sbjct 13715 TCGACTATGGACCTTAG-CACCCATAGTCTGTCTGCTATGCTGT-ACTCGTCGACATTCG 13772
Query 61 GAGTTTGGTTGATTTCGGTAAGCTTGTGGG-CCCCCTAGACCATCCAGTGCTCTACCTCC 119
||||||| |||| || |||||| |||||| |||||||| ||| ||||||||||||| |
Sbjct 13773 GAGTTTGATTGAGTTTGGTAAGTCTGTGGGACCCCCTAGCTCATTCAGTGCTCTACCTTC 13832
Query 120 GGGAAGAAACACGCGA-CGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAA 178
| || ||| | |||| |||||||| |||||| |||||||||||||| | |
Sbjct 13833 GACGGTAATCACTATAACGCTCTACCTAAATAGATTTCGCGGAGAACCAGCTATATCCGA 13892
Query 179 GTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGG 238
||||||||||||||||||||||| |||||| ||||||||| |||||||| ||||||
Sbjct 13893 GTTTGATTGGCCTTTCACCCCTAACCACAGCTCATCCCCTACTTTTTCAACAGTAGTGGG 13952
Query 239 TTCGGTCCTCCACGCGGTCTTAC-CCGCGCTTCAACCTGCCCATGGATAGATCACTTCGC 297
||||||||| || | | |||| |||| ||||||||| |||||| |||||||| |
Sbjct 13953 TTCGGTCCTTCAGTGGATTTTACTCCGC-TTTCAACCTGGCCATGGCTAGATCACCCGGT 14011
Query 298 TTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACC 357
||||||||| || | ||| | ||||||||||| ||||||||||||||||| ||||
Sbjct 14012 TTCGGGTCTAATTCATCTAACT-AAACGCCCTATTCAGACTCGCTTTCGCTACGCCTACA 14070
Query 358 CCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACG 417
|| |||| |||| || || | | || | || |||| | | |||| | ||||||| |||
Sbjct 14071 CCTAACGGCTTAAGCTTGCTAGATAA-ACTAAGTCGCTGACCCATTATACAAAAGGTACG 14129
Query 418 CCGTCACCTGGTACCTA-AAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCA 476
||||||| | || || ||| | ||| |||||||| | ||||| ||| ||||||||
Sbjct 14130 CCGTCACAAG--ACATATAAATACGCTT--GCTCCGACTGCTTGTAAGCATTTGGTTTCA 14185
Query 477 GGTACTATTTCACTCCCC--GCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCC 534
| |||||||||||||||| | | |||||||||||||||||||||||||||||||||| |
Sbjct 14186 GATACTATTTCACTCCCCTTGTC-GGGGTACTTTTCACCTTTCCCTCACGGTACTTGTTC 14244
Query 535 GCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAA 594
||||||||||| | ||||| ||||||||| |||||||||| | | |||| || |
Sbjct 14245 ACTATCGGTCACTAGAGAGTACTTAGGCTTAGAGGGTGGTCCCCCTATGTTCAAACAGGA 14304
Query 595 TTTCA 599
|||||
Sbjct 14305 TTTCA 14309
>seq16016
Length=1091
Score = 340 bits (376), Expect = 6e-91
Identities = 414/557 (74%), Gaps = 18/557 (3%)
Strand=Plus/Minus
Query 45 CACTTCCCGGCATTCGGAGTTTGGTTGATTTCGGTAAG-CTTGTGGGCCCCCTAGACCAT 103
||||| || |||||||||||| | || |||||| | | | |||||||| | |
Sbjct 798 CACTTGTAGGTATTCGGAGTTTGCATCGGTTTGGTAAGTCGGGATGACCCCCTAGCCGAA 739
Query 104 CCAGTGCTCTACCTCCGGGAA-GAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAG 162
|||||||||||| || | || ||| | | |||| |||||||| ||||| ||||
Sbjct 738 ACAGTGCTCTACCCCCTACAGTGATACATGAGGCGCT--ACCTAAATAGCTTTCGAGGAG 681
Query 163 AACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGT 222
||||||||||| | || |||||| ||||||||| || ||||||||||||||| || | |
Sbjct 680 AACCAGCTATCTCCGAGCTTGATTAGCCTTTCACTCCGATCCACAGGTCATCCGCTAACT 621
Query 223 TTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATG 282
||||||| | |||||||||||||||||| || ||||| |||||||||| |||||
Sbjct 620 TTTCAACGTTAGTGGGTTCGGTCCTCCAGCTCGTGTTACCGTGCCTTCAACCTGGCCATG 561
Query 283 GATAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCT 342
|||||||| | | | ||||||||| | || ||| || ||||||||| ||||||||
Sbjct 560 GATAGATCGCCTGGTTTCGGGTCTATTCCCAGCGACTAAT-CGCCCTATTAAGACTCGCT 502
Query 343 TTCGCTACGGCTACCCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCAT 402
||||||||| || ||| | | |||||| || || || || || |||| | | |||
Sbjct 501 TTCGCTACGCCTCCCCTATTC-GGTTAAGCTTGCCACTGAA-TATAAGTCGCTGACCCAT 444
Query 403 TCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTA 462
| | ||||||| |||| ||||| ||| ||||| ||||| || | |||||
Sbjct 443 TATACAAAAGGTACGCAGTCAC-----ACCACAAAGG------TGCTCCCACTGTTTGTA 395
Query 463 GGCACATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCA 522
||| | | ||||||| |||||||||||||| | ||||| |||||| |||||||||||
Sbjct 394 TGCATACGATTTCAGGATCTATTTCACTCCCCTTCCGGGGTTCTTTTCGCCTTTCCCTCA 335
Query 523 CGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAG 582
||||||| || | ||||||||| | |||||||||| ||| || ||||||| |||
Sbjct 334 CGGTACTGGTTCACTATCGGTCGATCACGAGTATTTAGCCTTGGAGGATGGTCCCCCCAT 275
Query 583 ATTCACACGAAATTTCA 599
||||| || ||||||
Sbjct 274 ATTCAGACAGGATTTCA 258
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1810884113408
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |