Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq165536 425 2e-116 seq16016 340 6e-91 >seq165536 Length=484117 Score = 425 bits (470), Expect = 2e-116 Identities = 467/605 (77%), Gaps = 16/605 (3%) Strand=Plus/Plus Query 1 TCGACTACGGAGCTTAATCCCCCGCAGTCTCACAGCCGCGCTCTCACTTCCCGGCATTCG 60 ||||||| ||| |||| | ||| ||||| | || ||| | ||| || |||||| Sbjct 13715 TCGACTATGGACCTTAG-CACCCATAGTCTGTCTGCTATGCTGT-ACTCGTCGACATTCG 13772 Query 61 GAGTTTGGTTGATTTCGGTAAGCTTGTGGG-CCCCCTAGACCATCCAGTGCTCTACCTCC 119 ||||||| |||| || |||||| |||||| |||||||| ||| ||||||||||||| | Sbjct 13773 GAGTTTGATTGAGTTTGGTAAGTCTGTGGGACCCCCTAGCTCATTCAGTGCTCTACCTTC 13832 Query 120 GGGAAGAAACACGCGA-CGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAA 178 | || ||| | |||| |||||||| |||||| |||||||||||||| | | Sbjct 13833 GACGGTAATCACTATAACGCTCTACCTAAATAGATTTCGCGGAGAACCAGCTATATCCGA 13892 Query 179 GTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGG 238 ||||||||||||||||||||||| |||||| ||||||||| |||||||| |||||| Sbjct 13893 GTTTGATTGGCCTTTCACCCCTAACCACAGCTCATCCCCTACTTTTTCAACAGTAGTGGG 13952 Query 239 TTCGGTCCTCCACGCGGTCTTAC-CCGCGCTTCAACCTGCCCATGGATAGATCACTTCGC 297 ||||||||| || | | |||| |||| ||||||||| |||||| |||||||| | Sbjct 13953 TTCGGTCCTTCAGTGGATTTTACTCCGC-TTTCAACCTGGCCATGGCTAGATCACCCGGT 14011 Query 298 TTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACC 357 ||||||||| || | ||| | ||||||||||| ||||||||||||||||| |||| Sbjct 14012 TTCGGGTCTAATTCATCTAACT-AAACGCCCTATTCAGACTCGCTTTCGCTACGCCTACA 14070 Query 358 CCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACG 417 || |||| |||| || || | | || | || |||| | | |||| | ||||||| ||| Sbjct 14071 CCTAACGGCTTAAGCTTGCTAGATAA-ACTAAGTCGCTGACCCATTATACAAAAGGTACG 14129 Query 418 CCGTCACCTGGTACCTA-AAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCA 476 ||||||| | || || ||| | ||| |||||||| | ||||| ||| |||||||| Sbjct 14130 CCGTCACAAG--ACATATAAATACGCTT--GCTCCGACTGCTTGTAAGCATTTGGTTTCA 14185 Query 477 GGTACTATTTCACTCCCC--GCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCC 534 | |||||||||||||||| | | |||||||||||||||||||||||||||||||||| | Sbjct 14186 GATACTATTTCACTCCCCTTGTC-GGGGTACTTTTCACCTTTCCCTCACGGTACTTGTTC 14244 Query 535 GCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAA 594 ||||||||||| | ||||| ||||||||| |||||||||| | | |||| || | Sbjct 14245 ACTATCGGTCACTAGAGAGTACTTAGGCTTAGAGGGTGGTCCCCCTATGTTCAAACAGGA 14304 Query 595 TTTCA 599 ||||| Sbjct 14305 TTTCA 14309 >seq16016 Length=1091 Score = 340 bits (376), Expect = 6e-91 Identities = 414/557 (74%), Gaps = 18/557 (3%) Strand=Plus/Minus Query 45 CACTTCCCGGCATTCGGAGTTTGGTTGATTTCGGTAAG-CTTGTGGGCCCCCTAGACCAT 103 ||||| || |||||||||||| | || |||||| | | | |||||||| | | Sbjct 798 CACTTGTAGGTATTCGGAGTTTGCATCGGTTTGGTAAGTCGGGATGACCCCCTAGCCGAA 739 Query 104 CCAGTGCTCTACCTCCGGGAA-GAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAG 162 |||||||||||| || | || ||| | | |||| |||||||| ||||| |||| Sbjct 738 ACAGTGCTCTACCCCCTACAGTGATACATGAGGCGCT--ACCTAAATAGCTTTCGAGGAG 681 Query 163 AACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGT 222 ||||||||||| | || |||||| ||||||||| || ||||||||||||||| || | | Sbjct 680 AACCAGCTATCTCCGAGCTTGATTAGCCTTTCACTCCGATCCACAGGTCATCCGCTAACT 621 Query 223 TTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATG 282 ||||||| | |||||||||||||||||| || ||||| |||||||||| ||||| Sbjct 620 TTTCAACGTTAGTGGGTTCGGTCCTCCAGCTCGTGTTACCGTGCCTTCAACCTGGCCATG 561 Query 283 GATAGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCT 342 |||||||| | | | ||||||||| | || ||| || ||||||||| |||||||| Sbjct 560 GATAGATCGCCTGGTTTCGGGTCTATTCCCAGCGACTAAT-CGCCCTATTAAGACTCGCT 502 Query 343 TTCGCTACGGCTACCCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCAT 402 ||||||||| || ||| | | |||||| || || || || || |||| | | ||| Sbjct 501 TTCGCTACGCCTCCCCTATTC-GGTTAAGCTTGCCACTGAA-TATAAGTCGCTGACCCAT 444 Query 403 TCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTA 462 | | ||||||| |||| ||||| ||| ||||| ||||| || | ||||| Sbjct 443 TATACAAAAGGTACGCAGTCAC-----ACCACAAAGG------TGCTCCCACTGTTTGTA 395 Query 463 GGCACATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCA 522 ||| | | ||||||| |||||||||||||| | ||||| |||||| ||||||||||| Sbjct 394 TGCATACGATTTCAGGATCTATTTCACTCCCCTTCCGGGGTTCTTTTCGCCTTTCCCTCA 335 Query 523 CGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAG 582 ||||||| || | ||||||||| | |||||||||| ||| || ||||||| ||| Sbjct 334 CGGTACTGGTTCACTATCGGTCGATCACGAGTATTTAGCCTTGGAGGATGGTCCCCCCAT 275 Query 583 ATTCACACGAAATTTCA 599 ||||| || |||||| Sbjct 274 ATTCAGACAGGATTTCA 258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1810884113408