Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq16016 522 7e-146 seq165536 311 2e-82 seq112571 77.0 8e-12 seq88502 73.4 1e-10 >seq16016 Length=1091 Score = 522 bits (578), Expect = 7e-146 Identities = 374/416 (90%), Gaps = 11/416 (3%) Strand=Plus/Minus Query 3 TCCGATCCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTA 62 ||||||||||||||||| |||||||||||| ||||| |||| ||||||||||||||| | Sbjct 646 TCCGATCCACAGGTCAT-CCGCTAACTTTT-CAACGTTAGTGGGTTCGGTCCTCCAGCTC 589 Query 63 GTAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTT 122 || |||||| |||| ||||||| |||| |||||||||||| ||||| |||||||||| Sbjct 588 GT-GTTACCGTGCCTT-CAACCTGGCCAT-GGATAGATCGCCTGGTTT-CGGGTCTATT- 534 Query 123 CCCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAA 182 ||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||| Sbjct 533 CCCAGCGACTAATCGCCCTATTAAGACTCGCTTT-CGCTACGCCTCCCCTATTCGGTTAA 475 Query 183 GCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACA 242 |||| ||||||||| ||||||||||||||||||||||||||||||||||||||| | ||| Sbjct 474 GCTT-GCCACTGAATATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACACCACA 416 Query 243 AAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCG 302 ||| | |||||||||| ||||| ||||||| |||||||||||||||||||||||| |||| Sbjct 415 AAG-GTGCTCCCACTGTTTGTATGCATACGATTTCAGGATCTATTTCACTCCCCT-TCCG 358 Query 303 GGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTA 362 |||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||| Sbjct 357 GGGTTCTTTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCGATCACGAGTATTTA 298 Query 363 GCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACT 418 |||||||||||||||||||||||||||||||| |||| |||| ||| |||||| Sbjct 297 GCCTTGGAGGATGGTCCCCCCATATTCAGACAGGATTTCACGTGTCCCGCCCTACT 242 >seq165536 Length=484117 Score = 311 bits (344), Expect = 2e-82 Identities = 329/420 (78%), Gaps = 19/420 (5%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 |||||| |||| || ||| |||||||||| ||||| ||||||||||| |||| | || Sbjct 13917 CCACAGCTCATCCC-CTA-CTTTTTCAACAGTAGTGGGTTCGGTCCTTCAGTGGATT-TT 13973 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 || | | |||||||||| |||| || |||||| |||||||| |||||||| ||| | | Sbjct 13974 ACTCCGC-TTTCAACCTGGCCAT-GGCTAGATCACCCGGTTT-CGGGTCTAATTC--ATC 14028 Query 129 GA-CTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCC-CCTATTCGGTTAAGCTT 186 | ||| |||||||| | ||||||||||| |||||||||| | |||| | |||||||| Sbjct 14029 TAACTAAACGCCCTATTCAGACTCGCTTT-CGCTACGCCTACACCTAACGGCTTAAGCTT 14087 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAA-- 244 || | ||| |||||||||||||||||||||||||||||||| ||||| ||| | Sbjct 14088 -GCTAGATAAACTAAGTCGCTGACCCATTATACAAAAGGTACGCCGTCACAAGACATATA 14146 Query 245 -----GTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCT 299 | ||||| |||||||||| |||| |||||||| ||||||||||||||| Sbjct 14147 AATACGCTTGCTCCGACTGCTTGTAAGCATTTGGTTTCAGATACTATTTCACTCCCCTTG 14206 Query 300 CCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTAT 359 |||||| |||||| |||||||||||||||||| ||||||||||||||| | |||| Sbjct 14207 TCGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTTCACTATCGGTCACTAGAGAGTAC 14266 Query 360 TTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419 |||| ||| |||| ||||||||| || |||| ||| |||| |||| ||| | ||||| Sbjct 14267 TTAGGCTTAGAGGGTGGTCCCCCTATGTTCAAACAGGATTTCACGTGTCCCGCCTTACTC 14326 >seq112571 Length=10328 Score = 77.0 bits (84), Expect = 8e-12 Identities = 76/97 (78%), Gaps = 1/97 (1%) Strand=Plus/Plus Query 271 CGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTA 330 |||||||| | || || |||| | ||| | ||||||||| ||||||||||||||| Sbjct 4546 CGGTTTCACGTACTCTTGAACTCTC-TCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTA 4604 Query 331 CTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTT 367 || || | |||||||||||||| || ||||||||| Sbjct 4605 CTTGTGAAGTATCGGTCAGTCAGACGTGTTTAGCCTT 4641 >seq88502 Length=1324 Score = 73.4 bits (80), Expect = 1e-10 Identities = 77/100 (77%), Gaps = 1/100 (1%) Strand=Plus/Plus Query 271 CGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTA 330 |||||||| | || || |||| | ||| | ||||||||| ||||||||||||||| Sbjct 63 CGGTTTCACGTACTCTTGAACTCTC-TCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTA 121 Query 331 CTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGA 370 || || |||||||||| || | |||||||||||| || Sbjct 122 CTTGTGAACTATCGGTCTCTCGGACGTATTTAGCCTTAGA 161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1237012387328