Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq292730 82.4 5e-14 seq327653 80.6 2e-13 seq71310 80.6 2e-13 seq342117 78.8 6e-13 seq50308 77.0 2e-12 seq122569 73.4 2e-11 seq278518 71.6 8e-11 >seq292730 Length=804350 Score = 82.4 bits (90), Expect = 5e-14 Identities = 73/86 (85%), Gaps = 4/86 (5%) Strand=Plus/Plus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98 |||||| | |||||||| |||| || ||||||||| ||||||||||| |||| ||||| Sbjct 716385 TCCGAA-GACCTCACTAAATCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTTCAAAG 716441 Query 99 GGCAGGGACGTAATACAACGCAAGCT 124 | |||||||||||| |||||| |||| Sbjct 716442 GACAGGGACGTAAT-CAACGCGAGCT 716466 >seq327653 Length=17985 Score = 80.6 bits (88), Expect = 2e-13 Identities = 71/84 (85%), Gaps = 5/84 (6%) Strand=Plus/Minus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98 |||||| | |||||||| | |||| ||||||||| | ||||||||| |||||||||| Sbjct 17263 TCCGAA-GACCTCACTAATCA--TTCAATCGGTAGTA-GTGACGGGCGGTGTGTACAAAG 17208 Query 99 GGCAGGGACGTAATACAACGCAAG 122 |||||||||||||| |||||| || Sbjct 17207 GGCAGGGACGTAAT-CAACGCGAG 17185 >seq71310 Length=1264 Score = 80.6 bits (88), Expect = 2e-13 Identities = 61/68 (90%), Gaps = 3/68 (4%) Strand=Plus/Minus Query 51 CACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTA 110 ||||||| |||| || ||||||||| ||||||||||| ||||||| |||||||||||||| Sbjct 841 CACTAAGTCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAGAGGGCAGGGACGTA 784 Query 111 ATACAACG 118 || ||||| Sbjct 783 AT-CAACG 777 >seq342117 Length=2893 Score = 78.8 bits (86), Expect = 6e-13 Identities = 72/86 (84%), Gaps = 4/86 (5%) Strand=Plus/Plus Query 39 TCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAG 98 |||||| | || ||||| |||| || ||||||||| ||||||||||| |||| ||||| Sbjct 1132 TCCGAA-GACCTTACTAAATCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTGCAAAG 1188 Query 99 GGCAGGGACGTAATACAACGCAAGCT 124 || ||||||||||| |||||| |||| Sbjct 1189 GGTAGGGACGTAAT-CAACGCGAGCT 1213 >seq50308 Length=1143 Score = 77.0 bits (84), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || |||||||| | ||||||||| |||||||||||||||||||| Sbjct 560 CTCACTAAATAATTTAAT-CGGTAGTA-GTGACGGGCGGTGTGTACAAAGGGCAGGGACG 503 Query 109 TAATACAACGCAAGCT 124 |||| ||| || |||| Sbjct 502 TAAT-CAATGCGAGCT 488 >seq122569 Length=13983 Score = 73.4 bits (80), Expect = 2e-11 Identities = 55/62 (89%), Gaps = 2/62 (3%) Strand=Plus/Minus Query 61 TTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCA 120 ||||| ||||||||| ||||||||||| |||||| |||||||| |||||||| |||||| Sbjct 13618 TTTCAATCGGTAGTA-GCGACGGGCGGTGTGTACGAAGGGCAGAGACGTAAT-CAACGCG 13561 Query 121 AG 122 || Sbjct 13560 AG 13559 >seq278518 Length=17012 Score = 71.6 bits (78), Expect = 8e-11 Identities = 55/63 (87%), Gaps = 2/63 (3%) Strand=Plus/Plus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||| ||||| ||||||||||| ||| ||||||||||||||||||| |||||| | Sbjct 15080 TTCAATCGATAGTA-GCGACGGGCGGTGTGCACAAAGGGCAGGGACGTAA-CCAACGCGA 15137 Query 122 GCT 124 ||| Sbjct 15138 GCT 15140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 299758032560