Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq165536 167 5e-39 seq16016 159 8e-37 >seq165536 Length=484117 Score = 167 bits (184), Expect = 5e-39 Identities = 293/418 (70%), Gaps = 23/418 (6%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||| ||||||| || ||||| |||||| |||||| ||| | ||||| ||||| || Sbjct 13305 CGATTACGCCTTTCAGCCTCATCTTAGGGGCCGACTAACCTTGCGCAGATTAACTTTACG 13364 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACC--CGTCACACGCTACTCATGCC 118 | ||||||||||| |||||| | ||| ||| | | | ||||||| ||| | Sbjct 13365 CAAGAACCCTTGGACTTTCGGCGAGAATGTTTCTCACATTCTTTAT-CGCTACTTATGTC 13423 Query 119 TGCATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACAC 177 ||||||||||| | | ||||| || || | || || |||| | || || Sbjct 13424 AGCATTCTCACTTCCGATACCTCCAGCAAACCTT-ACAGTTCACCTTCGCAGGCTTACGG 13482 Query 178 GACGCTCCCCTACC--------CAACCACACAGGTTGCCACAGCTTCGGCGGATA-ACTT 228 ||||||| ||||| ||| || | | || || |||||| ||| |||| Sbjct 13483 AACGCTCCGCTACCATTTATGTCAAATGCATAAAT--CCGCATCTTCGGTACATAGACTT 13540 Query 229 AAGCCCCGCTACATTATCGGCGCGGAATCACTT-----GACCAGTGAGCTATTACGCACT 283 ||||||| |||||| | ||||| | |||| ||| ||||||||||||||| | Sbjct 13541 GAGCCCCGTTACATTGTTGGCGCAAGAAAACTTATTTAGACTAGTGAGCTATTACGCTTT 13600 Query 284 CTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACG-CAACTCCACATCCT 342 |||| || |||||||||||| |||||||| |||| ||||| | | | || |||||||| Sbjct 13601 CTTTAAATGATGGCTGCTTCTAAGCCAACATCCTAGTTGTTTTGGTCTTCT-CACATCCT 13659 Query 343 TTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 || |||| ||||| | |||||| |||||| || | |||||||| ||||||||||| Sbjct 13660 TTAACACTTAGTCATGATTTAGGGACCTTAGATGGCGGTCTGGGCTTTTTCCCTCTCG 13717 >seq16016 Length=1091 Score = 159 bits (176), Expect = 8e-37 Identities = 150/190 (79%), Gaps = 1/190 (1%) Strand=Plus/Minus Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCA 266 || ||||||||| || ||| |||||| ||||| || |||| | | ||| || || Sbjct 1032 CCGCAGCTTCGGTCTATGGTTTA-GCCCCGTTACATCTTCCGCGCAGGACGACTCGATCA 974 Query 267 GTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTA 326 |||||||||||||| ||||| ||||||||||||||| ||||||||||||| | |||||| Sbjct 973 GTGAGCTATTACGCTTTCTTTAAAGGATGGCTGCTTCTAAGCCAACCTCCTAGCTGTCTA 914 Query 327 CGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGG 386 || ||||||| ||||||||| | || |||| ||| |||||||||| | |||||| Sbjct 913 AGCCTTCCCACATCGTTTCCCACTTAACCATAACTTTGGGACCTTAGCTGACGGTCTGGG 854 Query 387 CTGTTTCCCT 396 ||||||||| Sbjct 853 TTGTTTCCCT 844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1173248862208