Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18]
369,492 sequences; 1,765,382,190 total letters
Query= AAMG01001752.1
Length=400
Score E
Sequences producing significant alignments: (Bits) Value
seq165536 167 5e-39
seq16016 159 8e-37
>seq165536
Length=484117
Score = 167 bits (184), Expect = 5e-39
Identities = 293/418 (70%), Gaps = 23/418 (6%)
Strand=Plus/Plus
Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60
||| ||||||| || ||||| |||||| |||||| ||| | ||||| ||||| ||
Sbjct 13305 CGATTACGCCTTTCAGCCTCATCTTAGGGGCCGACTAACCTTGCGCAGATTAACTTTACG 13364
Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACC--CGTCACACGCTACTCATGCC 118
| ||||||||||| |||||| | ||| ||| | | | ||||||| ||| |
Sbjct 13365 CAAGAACCCTTGGACTTTCGGCGAGAATGTTTCTCACATTCTTTAT-CGCTACTTATGTC 13423
Query 119 TGCATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACAC 177
||||||||||| | | ||||| || || | || || |||| | || ||
Sbjct 13424 AGCATTCTCACTTCCGATACCTCCAGCAAACCTT-ACAGTTCACCTTCGCAGGCTTACGG 13482
Query 178 GACGCTCCCCTACC--------CAACCACACAGGTTGCCACAGCTTCGGCGGATA-ACTT 228
||||||| ||||| ||| || | | || || |||||| ||| ||||
Sbjct 13483 AACGCTCCGCTACCATTTATGTCAAATGCATAAAT--CCGCATCTTCGGTACATAGACTT 13540
Query 229 AAGCCCCGCTACATTATCGGCGCGGAATCACTT-----GACCAGTGAGCTATTACGCACT 283
||||||| |||||| | ||||| | |||| ||| ||||||||||||||| |
Sbjct 13541 GAGCCCCGTTACATTGTTGGCGCAAGAAAACTTATTTAGACTAGTGAGCTATTACGCTTT 13600
Query 284 CTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACG-CAACTCCACATCCT 342
|||| || |||||||||||| |||||||| |||| ||||| | | | || ||||||||
Sbjct 13601 CTTTAAATGATGGCTGCTTCTAAGCCAACATCCTAGTTGTTTTGGTCTTCT-CACATCCT 13659
Query 343 TTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400
|| |||| ||||| | |||||| |||||| || | |||||||| |||||||||||
Sbjct 13660 TTAACACTTAGTCATGATTTAGGGACCTTAGATGGCGGTCTGGGCTTTTTCCCTCTCG 13717
>seq16016
Length=1091
Score = 159 bits (176), Expect = 8e-37
Identities = 150/190 (79%), Gaps = 1/190 (1%)
Strand=Plus/Minus
Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCA 266
|| ||||||||| || ||| |||||| ||||| || |||| | | ||| || ||
Sbjct 1032 CCGCAGCTTCGGTCTATGGTTTA-GCCCCGTTACATCTTCCGCGCAGGACGACTCGATCA 974
Query 267 GTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTA 326
|||||||||||||| ||||| ||||||||||||||| ||||||||||||| | ||||||
Sbjct 973 GTGAGCTATTACGCTTTCTTTAAAGGATGGCTGCTTCTAAGCCAACCTCCTAGCTGTCTA 914
Query 327 CGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGG 386
|| ||||||| ||||||||| | || |||| ||| |||||||||| | ||||||
Sbjct 913 AGCCTTCCCACATCGTTTCCCACTTAACCATAACTTTGGGACCTTAGCTGACGGTCTGGG 854
Query 387 CTGTTTCCCT 396
|||||||||
Sbjct 853 TTGTTTCCCT 844
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1173248862208
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |