Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq165536 138 9e-31 seq347912 78.8 8e-13 >seq165536 Length=484117 Score = 138 bits (152), Expect = 9e-31 Identities = 128/161 (80%), Gaps = 1/161 (1%) Strand=Plus/Plus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||||||||| |||||||| ||| ||| |||| |||||| ||||| | |||| Sbjct 145894 TCGAGTTGCAGAGAACAATCCGAACTGAGATGT-CTTTTAGGGATTTGCTCCACGTCGCC 145952 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 | | || ||||||||| ||||||||| ||| ||| ||||| |||| ||||||||| Sbjct 145953 GTCTTGCTTCCCTCTGTAAACACCATTGTAGCACGCGTGTAGCCCAACCCGTAAGGGCCA 146012 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 ||| ||||||||||| |||||||||||||| || || |||| Sbjct 146013 TGATGACTTGACGTCGTCCCCACCTTCCTCTGGCTTATCAC 146053 >seq347912 Length=48280 Score = 78.8 bits (86), Expect = 8e-13 Identities = 75/96 (78%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 50 TCCCCCTCGCGGGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACC 109 || ||||||||||||||| || | ||| | |||||||| ||||||| ||||| Sbjct 40194 TCACCCTCGCGGGTTGGCAGCTCATTGTCCTTGCCATTGTAGCACGTGTGTAGCCCAGGA 40135 Query 110 CATAAGGGCCATGAGGACTTGACGTCATCCCCACCT 145 | |||||||| ||| || ||||||||||||||||| Sbjct 40134 CGTAAGGGCCGTGATGATCTGACGTCATCCCCACCT 40099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414510947240