Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq165536 190 3e-46 seq218279 111 3e-22 seq337855 91.5 2e-16 >seq165536 Length=484117 Score = 190 bits (210), Expect = 3e-46 Identities = 216/290 (74%), Gaps = 0/290 (0%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||||||||||| || | |||||||||| | |||| ||||||||||||| ||||| Sbjct 146445 CCCACGCTTTCGTGCATTAGCGTCAGTTGTAGCCCAGATGACCGCCTTCGCCACCGGTGT 146504 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||||| ||||||| | |||||||| |||||| |||||||| || || | ||| Sbjct 146505 TCCTCCTAATATCTAAGAATTTCACCTCTACACTAGGAATTCCATCATCCCCTACTACAC 146564 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180 || ||| | ||||| || ||| |||| ||||| | |||||| || ||| Sbjct 146565 TCTAGATTAGTAGTTTTGAAAGCAATTCCGAGGTTAAGCCCCGGGCTTTCACTTCCAACT 146624 Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240 | | |||||||| | | |||||| |||| ||| |||| | |||||| ||| ||| || Sbjct 146625 TACTAAACCGCCTACGCACTCTTTACGCCCAGTAATTCCGAACAACGCTAGCCCCCTCCG 146684 Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 | |||||||||||||||||||| ||||||||| ||||| ||| || ||| Sbjct 146685 TCTTACCGCGGCTGCTGGCACGGAGTTAGCCGGGGCTTTTTCTGCAAGTA 146734 >seq218279 Length=1762 Score = 111 bits (122), Expect = 3e-22 Identities = 102/129 (79%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 153 GTTGAGCCCATAGTTTTCACATCTGACTTGCCTTCCCGCCTACACGCCCTTTACACCCAA 212 ||||||| | | ||||||||||||||| |||||| | | |||||||| |||| Sbjct 1748 GTTGAGCTCGGGGATTTCACATCTGACTTATAAGACCGCCTGCGCACCCTTTACGCCCAG 1689 Query 213 TAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCG 272 ||| |||| ||||||| || |||| |||||||||||||||||||||| |||||||||| Sbjct 1688 TAATTCCGATTAACGCTCGCACCCTATGTATTACCGCGGCTGCTGGCACATAGTTAGCCG 1629 Query 273 TGGCTTATT 281 |||| || Sbjct 1628 GTGCTTCTT 1620 >seq337855 Length=263513 Score = 91.5 bits (100), Expect = 2e-16 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 223 TAACGCTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTC 282 ||||||| || |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 242648 TAACGCTCGCACCCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGGTGCTTATTC 242589 Query 283 CTCAGGTA 290 || |||| Sbjct 242588 TTCCGGTA 242581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 825833348732