Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq165536 318 9e-85 >seq165536 Length=484117 Score = 318 bits (352), Expect = 9e-85 Identities = 235/274 (86%), Gaps = 0/274 (0%) Strand=Plus/Plus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| ||| ||| |||||||||| |||||| ||||||||||| |||||||| ||||| Sbjct 12034 GAGGTGGGTTTCCTGCTTAGATGCATTCAGCGGTTATCCCTTCCGTACTTAGCTACCCAG 12093 Query 62 CTATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTAC 121 || ||| |||||| ||||||||| |||||| ||| ||||| | |||||||||||||| Sbjct 12094 CTGTGCCATTGGCATGACAACTGGTCCACCAGGGGTACGTCCACCTCGGTCCTCTCGTAC 12153 Query 122 TAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGC 181 ||| | ||| |||||||||| ||||||| |||||| | |||||||||||||||||||| | Sbjct 12154 TAAAGGCAGATCCTCTCAAACTTCCTACACCCACGGCAGATAGGGACCGAACTGTCTCAC 12213 Query 182 GACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACC 241 |||||||| |||||||||| ||| || ||||||| ||||||||||| ||||||||||||| Sbjct 12214 GACGTTCTAAACCCAGCTCACGTACCACTTTAATCGGCGAACAGCCGAACCCTTGGGACC 12273 Query 242 TACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 | || ||||||||||||| || |||||||||||| Sbjct 12274 TTCTCCAGCCCCAGGATGTGATGAGCCGACATCG 12307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 778005162512