Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18]
369,492 sequences; 1,765,382,190 total letters
Query= AAMG01002175.1
Length=414
Score E
Sequences producing significant alignments: (Bits) Value
seq218279 260 3e-67
seq165536 259 1e-66
seq337855 107 5e-21
>seq218279
Length=1762
Score = 260 bits (288), Expect = 3e-67
Identities = 173/192 (90%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 4 CTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63
||||||||||||||||||||||||| ||||||| ||||||| |||||| || | |||||
Sbjct 1558 CTTTACAACCCGAAGGCCTTCTTCACTCACGCGGAATGGCTGGATCAGGGTTTCCCCCAT 1499
Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 TGTCCAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 1439
Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183
|||||| || ||||||||||||||||| |||||||| || ||| |||| ||||||| ||
Sbjct 1438 TGGCTGATCGTCCTCTCAGACCAGCTACTGATCGTCGGCTTGGTAGGCCTTTACCCCACC 1379
Query 184 AACTAGCTAATC 195
||||| ||||||
Sbjct 1378 AACTACCTAATC 1367
>seq165536
Length=484117
Score = 259 bits (286), Expect = 1e-66
Identities = 307/415 (74%), Gaps = 26/415 (6%)
Strand=Plus/Plus
Query 4 CTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63
||||||||||| ||||||||| ||| ||| ||| || |||| ||||||||| |||||||
Sbjct 146762 CTTTACAACCCTAAGGCCTTCATCACTCACTCGGTATTGCTGGATCAGGCTTTCGCCCAT 146821
Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123
||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 146822 TGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTG 146881
Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183
|||||| |||||||||||||||||||| |||||||| || |||| ||| ||||| | ||
Sbjct 146882 TGGCTGATCATCCTCTCAGACCAGCTACAGATCGTCGGCTTGGTGAGCCGTTACCTCACC 146941
Query 184 AACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTG 243
||| | |||||| | ||| |||||| || || | || |||||
Sbjct 146942 AACGACCTAATCTGACGCGGGCTCATCCATCAGCGATA------AA--------TCTTTC 146987
Query 244 GTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGC 303
|| || ||| |||||||||| |||| | ||||| || | ||
Sbjct 146988 TTCCGTAGAGAATATACGGTATTAGCTTTTATTTCTAAAAGTTATTCCGTACTGATGGGT 147047
Query 304 AGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAA--GCAGCAAGCTGCTTC 361
|| |||||| ||||||||||||| |||||| | | || | ||||||| |
Sbjct 147048 AGATTCCCACGTGTTACTCACCCGTCTGCCACT----AACTAATTGGAGCAAGC----CC 147099
Query 362 CTGTTA--CCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414
| ||| ||||||||||||||||||||| || | ||| ||||||| ||||||
Sbjct 147100 CAATTAGTCCGTTCGACTTGCATGTGTTAAGCATACCGATAGCGTTCGTTCTGAG 147154
>seq337855
Length=263513
Score = 107 bits (118), Expect = 5e-21
Identities = 71/79 (90%), Gaps = 0/79 (0%)
Strand=Plus/Minus
Query 1 GTACTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCC 60
|| ||||||||||||||||||||||||| ||||||||||| |||| |||||| |||| ||
Sbjct 242531 GTGCTTTACAACCCGAAGGCCTTCTTCACACACGCGGCATTGCTGGATCAGGGTTGCCCC 242472
Query 61 CATTGTGCAATATTCCCCA 79
|||||| ||| ||||||||
Sbjct 242471 CATTGTCCAAAATTCCCCA 242453
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1217883329792
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |