Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq218279 260 3e-67 seq165536 259 1e-66 seq337855 107 5e-21 >seq218279 Length=1762 Score = 260 bits (288), Expect = 3e-67 Identities = 173/192 (90%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 4 CTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 ||||||||||||||||||||||||| ||||||| ||||||| |||||| || | ||||| Sbjct 1558 CTTTACAACCCGAAGGCCTTCTTCACTCACGCGGAATGGCTGGATCAGGGTTTCCCCCAT 1499 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1498 TGTCCAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 1439 Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183 |||||| || ||||||||||||||||| |||||||| || ||| |||| ||||||| || Sbjct 1438 TGGCTGATCGTCCTCTCAGACCAGCTACTGATCGTCGGCTTGGTAGGCCTTTACCCCACC 1379 Query 184 AACTAGCTAATC 195 ||||| |||||| Sbjct 1378 AACTACCTAATC 1367 >seq165536 Length=484117 Score = 259 bits (286), Expect = 1e-66 Identities = 307/415 (74%), Gaps = 26/415 (6%) Strand=Plus/Plus Query 4 CTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCAT 63 ||||||||||| ||||||||| ||| ||| ||| || |||| ||||||||| ||||||| Sbjct 146762 CTTTACAACCCTAAGGCCTTCATCACTCACTCGGTATTGCTGGATCAGGCTTTCGCCCAT 146821 Query 64 TGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 ||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||||| Sbjct 146822 TGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTG 146881 Query 124 TGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCC 183 |||||| |||||||||||||||||||| |||||||| || |||| ||| ||||| | || Sbjct 146882 TGGCTGATCATCCTCTCAGACCAGCTACAGATCGTCGGCTTGGTGAGCCGTTACCTCACC 146941 Query 184 AACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTG 243 ||| | |||||| | ||| |||||| || || | || ||||| Sbjct 146942 AACGACCTAATCTGACGCGGGCTCATCCATCAGCGATA------AA--------TCTTTC 146987 Query 244 GTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGC 303 || || ||| |||||||||| |||| | ||||| || | || Sbjct 146988 TTCCGTAGAGAATATACGGTATTAGCTTTTATTTCTAAAAGTTATTCCGTACTGATGGGT 147047 Query 304 AGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAA--GCAGCAAGCTGCTTC 361 || |||||| ||||||||||||| |||||| | | || | ||||||| | Sbjct 147048 AGATTCCCACGTGTTACTCACCCGTCTGCCACT----AACTAATTGGAGCAAGC----CC 147099 Query 362 CTGTTA--CCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 | ||| ||||||||||||||||||||| || | ||| ||||||| |||||| Sbjct 147100 CAATTAGTCCGTTCGACTTGCATGTGTTAAGCATACCGATAGCGTTCGTTCTGAG 147154 >seq337855 Length=263513 Score = 107 bits (118), Expect = 5e-21 Identities = 71/79 (90%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 1 GTACTTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCC 60 || ||||||||||||||||||||||||| ||||||||||| |||| |||||| |||| || Sbjct 242531 GTGCTTTACAACCCGAAGGCCTTCTTCACACACGCGGCATTGCTGGATCAGGGTTGCCCC 242472 Query 61 CATTGTGCAATATTCCCCA 79 |||||| ||| |||||||| Sbjct 242471 CATTGTCCAAAATTCCCCA 242453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1217883329792