Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq165536 416 8e-114 seq218279 327 3e-87 seq337855 138 3e-30 >seq165536 Length=484117 Score = 416 bits (460), Expect = 8e-114 Identities = 298/342 (87%), Gaps = 1/342 (0%) Strand=Plus/Minus Query 158 CCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCG 217 |||||||| |||||| | |||||| ||||||||||| |||||| |||||||| ||||| | Sbjct 146962 CCCGCGTCAGATTAGGTCGTTGGTGAGGTAACGGCTCACCAAGCCGACGATCTGTAGCTG 146903 Query 218 ACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGC 277 |||||||| ||||| |||||| ||| |||||||||||| ||| ||||||||||||||| Sbjct 146902 GTCTGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGC 146843 Query 278 AGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGAT 337 ||||||||||||||||| ||||||||| |||||||||| |||||| ||| ||||| ||| Sbjct 146842 AGCAGTGGGGAATATTGGACAATGGGCGAAAGCCTGATCCAGCAATACCGAGTGAGTGAT 146783 Query 338 GAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACTTGAGGAGG 397 ||||||||| |||| |||||||||| | ||||||||||||||||| |||||| || Sbjct 146782 GAAGGCCTTAGGGTTGTAAAGCTCTTTTAGCAAGGAAGATAATGACGTTACTTGCAGAAA 146723 Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 ||||||||||||||| |||||||||||||||||||| ||| |||||||||||||| | || Sbjct 146722 AAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGAGGGGGCTAGCGTTGTTCG 146663 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 499 |||||||| |||||||||| ||||||||| ||||| ||||| Sbjct 146662 GAATTACT-GGGCGTAAAGAGTGCGTAGGCGGTTTAGTAAGT 146622 >seq218279 Length=1762 Score = 327 bits (362), Expect = 3e-87 Identities = 291/364 (80%), Gaps = 30/364 (8%) Strand=Plus/Plus Query 164 TCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGA 223 ||||||||| |||||||| ||||| ||| ||||||| |||||||||||||| | |||| Sbjct 1364 TCTGATTAGGTAGTTGGTGGGGTAAAGGCCTACCAAGCCGACGATCAGTAGCTGGTCTGA 1423 Query 224 GAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGT 283 |||| |||| |||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct 1424 GAGGACGATCAGCCACACTGGAACTGAGACACGGTCCAGACTCCTACGGGAGGCAGCAGT 1483 Query 284 GGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGC 343 ||||||| ||| |||||||| ||| |||||| |||| | ||||||||| || |||||| Sbjct 1484 GGGGAATTTTGGACAATGGGGGAAACCCTGATCCAGCCATTCCGCGTGAGTGAAGAAGGC 1543 Query 344 CTTCGGGTCGTAAAGCTCTGTCCTCAAG-GAAGATA------------------------ 378 |||||||| |||||||||| | | |||| ||||| | Sbjct 1544 CTTCGGGTTGTAAAGCTCT-TTCGCAAGAGAAGAAATCTTACTATCTAATAAATAGTGAG 1602 Query 379 -ATGACGGTA-CTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATAC 436 ||||||||| ||||| | ||||| ||||||||||| |||||||||||||||||||||| Sbjct 1603 GATGACGGTATCTTGA-CAAGAAGCACCGGCTAACTATGTGCCAGCAGCCGCGGTAATAC 1661 Query 437 GTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTA 496 ||||| || ||||||| |||||||||| |||||||||||||||| ||| ||| | || Sbjct 1662 ATAGGGTGCGAGCGTTAATCGGAATTACT-GGGCGTAAAGGGTGCGCAGGCGGTCTTATA 1720 Query 497 AGTC 500 |||| Sbjct 1721 AGTC 1724 >seq337855 Length=263513 Score = 138 bits (152), Expect = 3e-30 Identities = 146/196 (74%), Gaps = 25/196 (13%) Strand=Plus/Plus Query 283 TGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGG 342 |||||||| ||| |||||||| || |||||| |||||| |||||||| | || ||||| Sbjct 242453 TGGGGAATTTTGGACAATGGGGGCAACCCTGATCCAGCAATGCCGCGTGTGTGAAGAAGG 242512 Query 343 CCTTCGGGTCGTAAAGCTCT---GTCCTCAAGGAAG------------ATA--------- 378 ||||||||| ||||||| || |||| || ||| ||| Sbjct 242513 CCTTCGGGTTGTAAAGCACTTTTGTCCGGAAAGAAATCGCGCTGGTTAATACCTGGCGTG 242572 Query 379 -ATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACG 437 |||||||||| || || |||| ||||||||||||||||||||||||||||||||||| Sbjct 242573 GATGACGGTACCGGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACG 242632 Query 438 TAGGGGGCTAGCGTTA 453 ||||| || ||||||| Sbjct 242633 TAGGGTGCGAGCGTTA 242648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1492066487808