Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq165536 398 2e-108 seq218279 147 5e-33 seq337855 87.8 4e-15 >seq165536 Length=484117 Score = 398 bits (440), Expect = 2e-108 Identities = 336/412 (82%), Gaps = 11/412 (3%) Strand=Plus/Minus Query 1 TACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGC 60 |||||| || ||||||||||||||| |||||||||||||||||||| ||| ||||||| Sbjct 146734 TACTTGCAGAAAAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGAGGGGGC 146675 Query 61 TAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGT 120 ||||||| | |||||||||||||||||||| ||||||||| ||||| ||||| || || Sbjct 146674 TAGCGTTGTTCGGAATTACTGGGCGTAAAGAGTGCGTAGGCGGTTTAGTAAGTTGGAAGT 146615 Query 121 GAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGG 180 ||||| | |||| |||| ||| | |||||| ||||| | |||||||| || ||| Sbjct 146614 GAAAGCCCGGGGCTTAACCTCGGAATTGCTTTCAAAACTACTAATCTAGAGTGTAGTAGG 146555 Query 181 GGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGG 240 || ||||||||||||||||| |||||||| | |||||||||||||||||||| |||| Sbjct 146554 GGATGATGGAATTCCTAGTGTAGAGGTGAAATTCTTAGATATTAGGAGGAACACCGGTGG 146495 Query 241 CGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAG 300 ||||||||| |||| || ||||||| || | || |||||||||||||||||||||| Sbjct 146494 CGAAGGCGGTCATCTGGGCTACAACTGACGCTAATGCACGAAAGCGTGGGGAGCAAACAG 146435 Query 301 GATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAA 360 ||||||||||||||||||||||||||||||||||||| | |||| | |||| || Sbjct 146434 GATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAGTGCTAGATATCGG-------AA 146382 Query 361 G-TGCTC---CGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | ||| |||| |||||| |||||| |||| | ||| ||||| ||||| Sbjct 146381 GATTCTCTTTCGGTTTCGCAGCTAACGCATTAAGCACTCCGCCTGGAGAGTA 146330 >seq218279 Length=1762 Score = 147 bits (162), Expect = 5e-33 Identities = 117/141 (83%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 12 GAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCC 71 ||||| ||||||||||| |||||||||||||||||||||| ||||| || ||||||| | Sbjct 1622 GAAGCACCGGCTAACTATGTGCCAGCAGCCGCGGTAATACATAGGGTGCGAGCGTTAATC 1681 Query 72 GGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATG 131 ||||||||||||||||||||||||| ||| ||| | ||||||||| |||||| | Sbjct 1682 GGAATTACTGGGCGTAAAGGGTGCGCAGGCGGTCTTATAAGTCAGATGTGAAATCCCCGA 1741 Query 132 GCTCAACCCCGGGACTGCTTT 152 ||||||| || ||||| || Sbjct 1742 GCTCAACTTGGGAACTGCGTT 1762 >seq337855 Length=263513 Score = 87.8 bits (96), Expect = 4e-15 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTA 68 |||| |||||||||||||||||||||||||||||||||||||||| || ||||||| Sbjct 242593 AAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCGAGCGTTA 242648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1198754272256