Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18]
369,492 sequences; 1,765,382,190 total letters
Query= AAMG01002183.1
Length=408
Score E
Sequences producing significant alignments: (Bits) Value
seq165536 398 2e-108
seq218279 147 5e-33
seq337855 87.8 4e-15
>seq165536
Length=484117
Score = 398 bits (440), Expect = 2e-108
Identities = 336/412 (82%), Gaps = 11/412 (3%)
Strand=Plus/Minus
Query 1 TACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGC 60
|||||| || ||||||||||||||| |||||||||||||||||||| ||| |||||||
Sbjct 146734 TACTTGCAGAAAAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGAGGGGGC 146675
Query 61 TAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGT 120
||||||| | |||||||||||||||||||| ||||||||| ||||| ||||| || ||
Sbjct 146674 TAGCGTTGTTCGGAATTACTGGGCGTAAAGAGTGCGTAGGCGGTTTAGTAAGTTGGAAGT 146615
Query 121 GAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGG 180
||||| | |||| |||| ||| | |||||| ||||| | |||||||| || |||
Sbjct 146614 GAAAGCCCGGGGCTTAACCTCGGAATTGCTTTCAAAACTACTAATCTAGAGTGTAGTAGG 146555
Query 181 GGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGG 240
|| ||||||||||||||||| |||||||| | |||||||||||||||||||| ||||
Sbjct 146554 GGATGATGGAATTCCTAGTGTAGAGGTGAAATTCTTAGATATTAGGAGGAACACCGGTGG 146495
Query 241 CGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAG 300
||||||||| |||| || ||||||| || | || ||||||||||||||||||||||
Sbjct 146494 CGAAGGCGGTCATCTGGGCTACAACTGACGCTAATGCACGAAAGCGTGGGGAGCAAACAG 146435
Query 301 GATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAA 360
||||||||||||||||||||||||||||||||||||| | |||| | |||| ||
Sbjct 146434 GATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAGTGCTAGATATCGG-------AA 146382
Query 361 G-TGCTC---CGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408
| | ||| |||| |||||| |||||| |||| | ||| ||||| |||||
Sbjct 146381 GATTCTCTTTCGGTTTCGCAGCTAACGCATTAAGCACTCCGCCTGGAGAGTA 146330
>seq218279
Length=1762
Score = 147 bits (162), Expect = 5e-33
Identities = 117/141 (83%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 12 GAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCC 71
||||| ||||||||||| |||||||||||||||||||||| ||||| || ||||||| |
Sbjct 1622 GAAGCACCGGCTAACTATGTGCCAGCAGCCGCGGTAATACATAGGGTGCGAGCGTTAATC 1681
Query 72 GGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATG 131
||||||||||||||||||||||||| ||| ||| | ||||||||| |||||| |
Sbjct 1682 GGAATTACTGGGCGTAAAGGGTGCGCAGGCGGTCTTATAAGTCAGATGTGAAATCCCCGA 1741
Query 132 GCTCAACCCCGGGACTGCTTT 152
||||||| || ||||| ||
Sbjct 1742 GCTCAACTTGGGAACTGCGTT 1762
>seq337855
Length=263513
Score = 87.8 bits (96), Expect = 4e-15
Identities = 53/56 (95%), Gaps = 0/56 (0%)
Strand=Plus/Plus
Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTA 68
|||| |||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 242593 AAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCGAGCGTTA 242648
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1198754272256
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |