Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq16016 399 7e-109 seq165536 322 2e-85 >seq16016 Length=1091 Score = 399 bits (442), Expect = 7e-109 Identities = 391/497 (79%), Gaps = 9/497 (2%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGAC-AGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCAT 60 |||||| || ||||||| |||||||||| |||||||||||||| | |||||| |||| Sbjct 504 CGAGTCTTAATAGGGCGATTAGTCGCTGGGAATAGACCCGAAACCAGGCGATCTATCCAT 563 Query 61 GGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAAT 120 ||||||| |||||| |||||||||| ||||||| ||||||||||||| |||||||| | Sbjct 564 GGCCAGGTTGAAGGCACGGTAACACGAGCTGGAGGACCGAACCCACTAACGTTGAAAAGT 623 Query 121 TAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTC 180 ||| |||||| |||||| | || |||||||||||| ||| || ||| ||||||||||||| Sbjct 624 TAGCGGATGACCTGTGGATCGGAGTGAAAGGCTAATCAAGCTCGGAGATAGCTGGTTCTC 683 Query 181 TCCGAAAACTATTTAGGTAGTGCCTCAAGTATCACCATCGGGGGTAGAGCACTGTTATGG 240 ||||| |||||||||||| |||||| ||||||| | ||||||||||||||||| || Sbjct 684 CTCGAAAGCTATTTAGGTAGCGCCTCATGTATCACTGTAGGGGGTAGAGCACTGTTTCGG 743 Query 241 CTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGT-TTTAC 299 |||||||||||| |||||||||||||| |||||||||||||| | | ||| | Sbjct 744 CTAGGGGGTCATCCCGACTTACCAAACCGATGCAAACTCCGAATACCTACAAGTGCCGAG 803 Query 300 CGCGGGAG--TGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACT 357 | ||||| | ||| ||||||||| |||||| | ||| || || || ||| Sbjct 804 CATGGGAGACACACGGC--GGGTGCTAACGTCCGTCGTGAAAAGGGAAACAACCCAGACC 861 Query 358 ATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACA 417 |||||||||| ||| || | | | ||||| | ||||| || || ||| ||||| Sbjct 862 GTCAGCTAAGGTCCCAAAGTTATGGTTAAGTGGGA--AACGATGTGGGAAGGCTTAGACA 919 Query 418 GCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTC 477 ||||||| |||||||| |||||||||| || |||||||| |||||| |||||||| || Sbjct 920 GCTAGGAGGTTGGCTTAGAAGCAGCCA-TCCTTTAAAGAAAGCGTAATAGCTCACTGATC 978 Query 478 GAGGAGTCGGGCGTGGA 494 ||| ||| ||| ||| Sbjct 979 GAGTCGTCCTGCGCGGA 995 >seq165536 Length=484117 Score = 322 bits (356), Expect = 2e-85 Identities = 349/451 (77%), Gaps = 14/451 (3%) Strand=Plus/Minus Query 33 TAGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGG 92 ||||||||||||| |||||||| ||||||||||| |||| | | |||| | | ||| Sbjct 14021 TAGACCCGAAACCGGGTGATCTAGCCATGGCCAGGTTGAAAGCGGAGTAAAATCCACTGA 13962 Query 93 AGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGC 152 ||| |||||||||||| |||||||||| ||||||||||||||||| |||||||||||||| Sbjct 13961 AGGACCGAACCCACTACTGTTGAAAAAGTAGGGGATGAGCTGTGGTTAGGGGTGAAAGGC 13902 Query 153 TAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCA-AGT- 210 || |||||| ||| ||||||||||||| ||||| |||||||||||| || | | ||| Sbjct 13901 CAATCAAACTCGGATATAGCTGGTTCTCCGCGAAATCTATTTAGGTAGAGCGTTATAGTG 13842 Query 211 ATCACCATCGGGGGTAGAGCACTGTTATG-GCTAGGGGGTCATTGCGACTTACCAAAC-C 268 || ||| ||| |||||||||||| ||| ||||||||||| |||||||||||| | Sbjct 13841 ATTACCGTCGAAGGTAGAGCACTG-AATGAGCTAGGGGGTCCCACAGACTTACCAAACTC 13783 Query 269 ATTGCAAACTCCGAATGCGCATCAGTTTTACCGC--GGGAGTGAGGGCATGGGTGCTAAG 326 | | ||||||||||||| | || ||| || | || || |||||||||||| Sbjct 13782 AAT-CAAACTCCGAATGTCGACGAG---TACAGCATAGCAGACAGACTATGGGTGCTAAG 13727 Query 327 GTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAA 386 |||| | ||||||| || | || ||| || |||||| ||| |||| | |||| Sbjct 13726 GTCCATAGTCGAGAGGGAAAAAGCCCAGACCGCCATCTAAGGTCCCTAAATCATGACTAA 13667 Query 387 GTTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATT 446 || | || || || || | || ||| ||||||||||||||| |||||||||| | Sbjct 13666 GTGTTA--AAGGATGTGAGAAGACCAAAACAACTAGGATGTTGGCTTAGAAGCAGCCA-T 13610 Query 447 CATTTAAAGAGTGCGTAACAGCTCACTAGTC 477 |||||||||| |||||| |||||||||||| Sbjct 13609 CATTTAAAGAAAGCGTAATAGCTCACTAGTC 13579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1683357063168