Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq165536 201 2e-49 seq16016 129 1e-27 >seq165536 Length=484117 Score = 201 bits (222), Expect = 2e-49 Identities = 192/243 (79%), Gaps = 7/243 (3%) Strand=Plus/Minus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 || ||| |||||||||||||||| | ||||||||||||||||| || ||||||| Sbjct 14667 AGAGCATTTGGTGGATGCCTTGGCACTAGAAGGCGATGAAGGACGTAATACGCTGCGATA 14608 Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGC 120 |||| |||||||| || || | ||||||||||| ||||||||||||||||||| || | Sbjct 14607 AGCTTCGGGGAGTT-GCGAATAAACTTTGATCCGAAGATTTCCGAATGGGGAAAACCCAC 14549 Query 121 CCT-----TTGGGTCATTGCATGCTGAATACATAGGTATGCAAAGCGAACGCGGCGAACT 175 | || ||| |||| || ||||||||||| ||| | || ||| | ||||||| Sbjct 14548 CTAATTTATTAGGT-ATTGTATAGTGAATACATAGCTATATGAGGCAAACCCAGCGAACT 14490 Query 176 GAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGC 235 |||| ||||||||||||| |||||| || ||||||||||| ||| ||||||| ||||| Sbjct 14489 GAAATATCTAAGTAGCTGGAGGAAAGGACATCAACCGAGACTCCGTTAGTAGTGACGAGC 14430 Query 236 GAA 238 ||| Sbjct 14429 GAA 14427 >seq16016 Length=1091 Score = 129 bits (142), Expect = 1e-27 Identities = 141/186 (76%), Gaps = 1/186 (1%) Strand=Plus/Plus Query 135 CATGCTGAATACATAGGTATGCAAAG-CGAACGCGGCGAACTGAAACATCTAAGTAGCTG 193 ||||||||||||||||| ||| || ||||| | |||||||| ||||| |||| || Sbjct 21 CATGCTGAATACATAGGCATGTGGAGGCGAACCGAGTGAACTGAACCATCTCAGTAACTC 80 Query 194 CAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCTTT 253 ||||||||||||||||||||||||| |||||||||||||||||| ||| ||||| Sbjct 81 GAGGAAAAGAAATCAACCGAGATTCCGGAAGTAGTGGCGAGCGAAACCGGACCAGCCTGG 140 Query 254 ACGAGATAGTTGAATTGATAGTGGAATCCTCTGGAAATAGGAGCCATAGCGGGTGATAGC 313 | | ||| | | ||||| |||| |||||| |||| ||| ||||||||| Sbjct 141 ATGTTTTAGCGTAGTGAATAGTCGAATGGAATGGAAAGTCCAGCCGTAGTAGGTGATAGC 200 Query 314 CCCGTA 319 || ||| Sbjct 201 CCTGTA 206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915006585472