Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20scapularis_20[refseq_20GCF_5F000208615.1_202008-04-18] 369,492 sequences; 1,765,382,190 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq165536 327 4e-87 >seq165536 Length=484117 Score = 327 bits (362), Expect = 4e-87 Identities = 414/567 (73%), Gaps = 23/567 (4%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTC-ACCACCTGATTGC 59 ||| ||||| || |||||||||| ||| ||| ||| || ||||| | | ||||| | Sbjct 12442 TCGTCTTGTCAGACTCGCAGTCAGGCTAGCTTATGCCATTGCACTCTAAAAGTTGATTTC 12501 Query 60 CAACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCA 119 | |||| ||||| |||| | | ||||||||||||| ||||||||| | ||||||||| Sbjct 12502 CGACCAACCTGAGCTAACCATCGCGCGCCTCCGTTACTCTTTGGGAGG-CGACCGCCCCA 12560 Query 120 GTTAAACTACCCACCAGGCACTGTCCCCAACCCAGAT-CATGGGCCAAGGTTAGATATCC 178 || ||||||||||||| ||| |||| | | || ||| || || | |||||||| || Sbjct 12561 GTCAAACTACCCACCATGCATTGTCTCGGATCCTGATTCAAGGATCTCGGTTAGATGTCA 12620 Query 179 ACTACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATA 238 | || || ||||||| |||| | |||||||||| || | ||| || || Sbjct 12621 AGAACCAAAAGGGTGGTATCTCAATGATGACTCCACAAAGGCTGACACCTTCGCTTCGTA 12680 Query 239 GTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTC 298 |||||||||||||||| |||| || || ||| | | |||||||||| ||||| Sbjct 12681 GTCTCCCACCTATCCTGCACATCTGATTCCTAACACCAGTGCAAAGCTATAGTAAAGGTT 12740 Query 299 C-CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCAC 357 | |||||||||| |||| |||| ||| ||||||| || | | ||||||| | Sbjct 12741 CACGGGGTCTTTCCGTCTGACCGCAGGAACTCCGCATCTTCACGGAGAATTCAATTTCGC 12800 Query 358 CGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTAC 417 | | | | | ||||||| ||| | |||||||||||||||||| ||||||||||||| Sbjct 12801 TGAGTCGATACTGGAGACAGTGGGGAAATCGTTACGCCATTCGTGCGGGTCGGAACTTAC 12860 Query 418 CCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCT 477 ||||||||||||||||||||||||||| || |||||||| |||||||| |||||| || Sbjct 12861 CCGACAAGGAATTTCGCTACCTTAGGACCGTCATAGTTACGGCCGCCGTTCACTGGGACT 12920 Query 478 TCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCAC 537 |||||| || | | || ||| |||| |||| |||||||||| Sbjct 12921 TCAATT----------CAGAGCTCG---------CACCCCTCCTTTTAATCTTCCAGCAC 12961 Query 538 CGGGCAGGCGTCAGTCCGTATACCTCG 564 ||||||||||||| || ||||| ||| Sbjct 12962 TGGGCAGGCGTCAGACCCTATACGTCG 12988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1696109768192